RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB17675" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB17675 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28637584 28637584 PRJEB17675_P_NODE_4847_length_441_cov_1.573892_g4549_i0 PRJEB17675 4847 441 1.573892 6.94086372 root 1 Root_unresolved Root_unresolved 57 2.48e-6   NR HEY4954046.1 2026741 g4549 i0 28 5.80272108843537 132 84 82.3 2 367 5 172 303 HEY4954046.1 universal stress protein [Gemmatimonadaceae bacterium] diamond 2559 57 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30437745 30437745 PRJEB17675_P_NODE_14873_length_211_cov_1.318182_g14569_i0 PRJEB17675 14873 211 1.318182 2.78136402 root 1 Root_unresolved Root_unresolved 70.5 1.76e-12   NR MEX2467313.1 2026742 g14569 i0 53 43.1800947867299 66 31 93.8 0 8 205 124 189 MEX2467313.1 slipin family protein [Gemmatimonadota bacterium] diamond 9111 70.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;