RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB17675" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB17675 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28012532 28012532 PRJEB17675_P_NODE_8365_length_312_cov_1.328520_g8061_i0 PRJEB17675 8365 312 1.32852 4.1449824 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 53.5 1.24e-5   NR ETO00049.1 46433 g8061 i0 54 0.865384615384615 50 22 48.1 1 312 163 3 51 ETO00049.1 hypothetical protein RFI_37409, partial [Reticulomyxa filosa] diamond 270 53.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
30412618 30412618 PRJEB17675_P_NODE_14073_length_219_cov_1.733696_g13769_i0 PRJEB17675 14073 219 1.733696 3.79679424 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 97.8 1.1e-21   NR ETO10243.1 46433 g13769 i0 59.1 2.72602739726027 66 27 90.4 0 5 202 511 576 ETO10243.1 hypothetical protein RFI_27134, partial [Reticulomyxa filosa] diamond 597 97.8 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;