RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB17675" and tax_kingdom = "Thermotogati"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJEB17675 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17873261 17873261 PRJEB17675_P_NODE_16575_length_197_cov_1.129630_g16271_i0 PRJEB17675 16575 197 1.12963 2.2253711 Deinococcus actinosclerus 1768108 Bacteria Bacteria 279 7.19e-71   NTclustered gi|972944657|gb|CP013910.1| 1768108 g16271 i0 93.617 338.89847715736 188 11 95 1 11 197 74511 74698 Deinococcus actinosclerus strain BM2 chromosome, complete genome blastn 66763 279 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus actinosclerus
22973605 22973605 PRJEB17675_P_NODE_11139_length_256_cov_6.466063_g10835_i0 PRJEB17675 11139 256 6.466063 16.55312128 Deinococcus actinosclerus 1768108 Bacteria Bacteria 399 7.209999999999998e-107   NTclustered gi|972944657|gb|CP013910.1| 1768108 g10835 i0 94.942 184.20703125 257 9 99 4 2 256 74194 74448 Deinococcus actinosclerus strain BM2 chromosome, complete genome blastn 47157 399 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus actinosclerus
27816657 27816657 PRJEB17675_P_NODE_15724_length_203_cov_1.666667_g15420_i0 PRJEB17675 15724 203 1.666667 3.38333401 PVC group 1783257 Bacteria Bacteria 105 6.95e-26   NR MDO4219532.1 2053624 g15420 i0 80.6 15.5615763546798 62 12 91.6 0 1 186 187 248 MDO4219532.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase [Synergistaceae bacterium] diamond 3159 105 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
32404406 32404406 PRJEB17675_P_NODE_17699_length_188_cov_1.745098_g17395_i0 PRJEB17675 17699 188 1.745098 3.28078424 Pseudothermotoga sp. 2033661 Bacteria Bacteria 43.9 0.00246   NR WP_345967341.1 2033661 g17395 i0 54.1 0.590425531914894 37 16 57.4 1 186 79 85 121 WP_345967341.1 glycine cleavage system protein GcvH [Pseudothermotoga sp.] diamond 111 43.9 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Pseudothermotoga Pseudothermotoga sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;