RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB15333", tax_phylum = "Nematoda" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB15333 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27469288 27469288 PRJEB15333_P_NODE_7903_length_238_cov_0.788360_g7819_i0 PRJEB15333 7903 238 0.78836 1.8762968 Rhabditida 6236 Nematoda Nematoda 48.5 1.75e-4   NR EJW71911.1 6293 g7819 i0 46.8 1.18487394957983 47 25 59.2 0 5 145 1 47 EJW71911.1 hypothetical protein WUBG_17182, partial [Wuchereria bancrofti] diamond 282 48.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
28138866 28138866 PRJEB15333_P_NODE_20825_length_162_cov_0.769912_g20741_i0 PRJEB15333 20825 162 0.769912 1.24725744 Ancylostoma caninum 29170 Nematoda Nematoda 40.8 0.0301   NR RCN34105.1 29170 g20741 i0 48.6 0.685185185185185 37 19 68.5 0 154 44 31 67 RCN34105.1 hypothetical protein ANCCAN_20055 [Ancylostoma caninum] diamond 111 40.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum
30159282 30159282 PRJEB15333_P_NODE_20592_length_162_cov_0.920354_g20508_i0 PRJEB15333 20592 162 0.920354 1.49097348 Strongyloides ratti 34506 Nematoda Nematoda 41.2 0.0438   NR XP_024508221.1 34506 g20508 i0 42.9 0.907407407407407 49 27 90.7 1 154 8 960 1007 XP_024508221.1 Ribonuclease Zc3h12a-like domain-containing protein [Strongyloides ratti] diamond 147 41.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;