RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB15333" and tax_clade = "PVC group"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJEB15333 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15323778 15323778 PRJEB15333_P_NODE_4493_length_305_cov_0.867188_g4409_i0 PRJEB15333 4493 305 0.867188 2.6449234 Phycisphaera mikurensis 547188 Bacteria Bacteria 52.8 0.028   NTclustered gi|381385343|dbj|AP012338.1| 1142394 g4409 i0 100 0.0918032786885246 28 0 9 0 78 105 2362423 2362396 Phycisphaera mikurensis NBRC 102666 DNA, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae Phycisphaera Phycisphaera mikurensis
27602049 27602049 PRJEB15333_P_NODE_9964_length_215_cov_0.879518_g9880_i0 PRJEB15333 9964 215 0.879518 1.8909637 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 42.7 0.0257   NR MDO8662997.1 2035772 g9880 i0 48.5 0.46046511627907 33 13 46 1 48 146 323 351 MDO8662997.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 99 42.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
27823054 27823054 PRJEB15333_P_NODE_18424_length_166_cov_0.888889_g18340_i0 PRJEB15333 18424 166 0.888889 1.47555574 Planctomycetales bacterium ZRK34 2723666 Bacteria Bacteria 41.6 0.0343   NR QNN24842.1 2723666 g18340 i0 43.2 0.668674698795181 37 21 66.9 0 5 115 106 142 QNN24842.1 cell division protein FtsW [Planctomycetales bacterium ZRK34] diamond 111 41.6 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales     Planctomycetales bacterium ZRK34

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;