RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB14803", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJEB14803 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14049530 14049530 PRJEB14803_P_NODE_19632_length_262_cov_2.427313_g19166_i0 PRJEB14803 19632 262 2.427313 6.35956006 uncultured Mycoplasmatota bacterium 658143 Bacteria Bacteria 217 8.009999999999999e-52   NTclustered gi|2187163482|emb|OV788640.1| 658143 g19166 i0 82.101 430.034351145038 257 43 98 3 2 257 373492 373746 uncultured Tenericutes bacterium isolate min17_bin11 genome assembly, chromosome: 1 blastn 112669 217 1 Bacteria   Bacillati Mycoplasmatota         uncultured Mycoplasmatota bacterium
18837591 18837591 PRJEB14803_P_NODE_22715_length_237_cov_2.064356_g22249_i0 PRJEB14803 22715 237 2.064356 4.89252372 Mycoplasma 2093 Bacteria Bacteria 78.7 3.51e-10   NTclustered gi|526641973|ref|NR_103970.1| 57372 g22249 i0 90.323 28.6835443037975 62 3 25 3 112 170 488 549 Mycoplasma suis strain Illinois 23S ribosomal RNA gene, complete sequence blastn 6798 78.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma suis
21387909 21387909 PRJEB14803_P_NODE_13677_length_332_cov_2.599327_g13212_i0 PRJEB14803 13677 332 2.599327 8.62976564 Bacillati 1783272 Bacteria Bacteria 104 1.9e-26   NR NMA06015.1 1898209 g13212 i0 59.5 3.59638554216867 79 32 71.4 0 241 5 10 88 NMA06015.1 thioredoxin [Acholeplasmataceae bacterium] diamond 1194 105 0.990476190476191 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;