RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB14803", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJEB14803 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5124000 5124000 PRJEB14803_P_NODE_8345_length_457_cov_3.789100_g7885_i0 PRJEB14803 8345 457 3.7891 17.316187 Pseudomonadati 3379134 Bacteria Bacteria 233 5.549999999999999e-72   NR NLE40658.1 1932692 g7885 i0 78.7 29.6849015317287 141 30 92.6 0 34 456 2 142 NLE40658.1 adenosylhomocysteinase [Lentisphaerota bacterium] diamond 13566 233 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
29149302 29149302 PRJEB14803_P_NODE_14789_length_316_cov_1.238434_g14323_i0 PRJEB14803 14789 316 1.238434 3.91345144 Lentisphaeraceae bacterium 2461380 Bacteria Bacteria 48.5 7.51e-4   NR MCM8536693.1 2461380 g14323 i0 36 0.816455696202532 86 51 81.6 2 260 3 92 173 MCM8536693.1 sel1 repeat family protein [Lentisphaeraceae bacterium] diamond 258 48.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Lentisphaerales Lentisphaeraceae   Lentisphaeraceae bacterium
30248113 30248113 PRJEB14803_P_NODE_12252_length_357_cov_2.204969_g11787_i0 PRJEB14803 12252 357 2.204969 7.87173933 Pseudomonadati 3379134 Bacteria Bacteria 90.5 2.4e-18   NR WP_007280335.1 256847 g11787 i0 45.9 2.57983193277311 109 41 84 3 27 326 194 293 WP_007280335.1 alpha/beta hydrolase fold domain-containing protein [Lentisphaera araneosa] diamond 921 90.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Lentisphaerales Lentisphaeraceae Lentisphaera Lentisphaera araneosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;