RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJEB14803", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 5 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 5 ✖

bioproject 1

  • PRJEB14803 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26646583 26646583 PRJEB14803_P_NODE_31441_length_192_cov_1.528662_g30975_i0 PRJEB14803 31441 192 1.528662 2.93503104 Pseudomonadati 3379134 Bacteria Bacteria 48.1 2.37e-4   NR MBI2423385.1 2030809 g30975 i0 42.3 1.796875 52 29 81.3 1 36 191 1421 1471 MBI2423385.1 exo-alpha-sialidase [Candidatus Hydrogenedentota bacterium] diamond 345 48.1 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
26875209 26875209 PRJEB14803_P_NODE_34081_length_183_cov_1.081081_g33615_i0 PRJEB14803 34081 183 1.081081 1.97837823 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 83.6 6.6e-17   NR HOJ67973.1 2030809 g33615 i0 62.1 5.68852459016393 58 22 95.1 0 175 2 194 251 HOJ67973.1 hydroxylamine reductase [Candidatus Hydrogenedentota bacterium] diamond 1041 83.6 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
31550308 31550308 PRJEB14803_P_NODE_30636_length_195_cov_1.700000_g30170_i0 PRJEB14803 30636 195 1.7 3.315 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 43.5 0.00976   NR HOC70179.1 2030809 g30170 i0 78.3 0.353846153846154 23 5 35.4 0 181 113 1 23 HOC70179.1 hypothetical protein [Candidatus Hydrogenedentota bacterium] diamond 69 43.5 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
31961205 31961205 PRJEB14803_P_NODE_18898_length_269_cov_1.427350_g18432_i0 PRJEB14803 18898 269 1.42735 3.8395715 Candidatus Hydrogenedens sp. 2654184 Bacteria Bacteria 124 5.67e-32   NR MBI1319405.1 2654184 g18432 i0 60.7 1.98513011152416 89 35 99.3 0 1 267 181 269 MBI1319405.1 hypothetical protein [Candidatus Hydrogenedens sp.] diamond 534 124 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota Candidatus Hydrogenedentia Candidatus Hydrogenedentales Candidatus Hydrogenedentaceae Candidatus Hydrogenedens Candidatus Hydrogenedens sp.
32594114 32594114 PRJEB14803_P_NODE_41960_length_161_cov_1.269841_g41494_i0 PRJEB14803 41960 161 1.269841 2.04444401 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 79 2.09e-15   NR HDP34088.1 2030809 g41494 i0 63.5 0.968944099378882 52 19 96.9 0 3 158 713 764 HDP34088.1 DUF1854 domain-containing protein [Candidatus Hydrogenedentota bacterium] diamond 156 79 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;