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contig_metadata

10 rows where bioproject = "PRJEB14803", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 10 ✖

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJEB14803 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
985824 985824 PRJEB14803_P_NODE_4961_length_626_cov_2.368866_g4563_i0 PRJEB14803 4961 626 2.368866 14.82910116 Vermamoeba 1260114 Tubulinea other_Eukaryota 1118 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g4563 i0 98.882 70.8003194888179 626 7 100 0 1 626 5541 4916 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 44321 1118 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
2571248 2571248 PRJEB14803_P_NODE_1663_length_1112_cov_2.429898_g1439_i0 PRJEB14803 1663 1112 2.429898 27.02046576 Copromyxa protea 931554 Tubulinea other_Eukaryota 1181 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g1439 i0 86.467 16.0692446043165 1101 119 97 21 36 1112 1389 295 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 17869 1181 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
12775153 12775153 PRJEB14803_P_NODE_7071_length_504_cov_4.081023_g6618_i0 PRJEB14803 7071 504 4.081023 20.56835592 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 931 0   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g6618 i0 100 80.281746031746 504 0 100 0 1 504 1152 649 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 40462 931 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
13739268 13739268 PRJEB14803_P_NODE_34951_length_180_cov_1.379310_g34485_i0 PRJEB14803 34951 180 1.37931 2.482758 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 322 1.05e-83   NTclustered gi|300078496|gb|GU001158.1| 5778 g34485 i0 98.889 24.0944444444444 180 2 100 0 1 180 1481 1660 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4337 322 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14049622 14049622 PRJEB14803_P_NODE_37872_length_171_cov_1.470588_g37406_i0 PRJEB14803 37872 171 1.470588 2.51470548 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 316 4.6e-82   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g37406 i0 100 26.0233918128655 171 0 100 0 1 171 1500 1670 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 4450 316 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
18837583 18837583 PRJEB14803_P_NODE_15455_length_307_cov_1.764706_g14989_i0 PRJEB14803 15455 307 1.764706 5.41764742 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 483 8.569999999999998e-132   NTclustered gi|300078496|gb|GU001158.1| 5778 g14989 i0 94.137 37.671009771987 307 15 99 1 1 304 1063 1369 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11565 483 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20422218 20422218 PRJEB14803_P_NODE_42477_length_160_cov_0.960000_g42011_i0 PRJEB14803 42477 160 0.96 1.536 Copromyxa protea 931554 Tubulinea other_Eukaryota 94 7.200000000000001e-22   NR BAV21603.1 931554 g42011 i0 80.8 3.9 52 10 97.5 0 158 3 180 231 BAV21603.1 elongation factor 2 alpha, partial [Copromyxa protea] diamond 624 94 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
21698129 21698129 PRJEB14803_P_NODE_24878_length_223_cov_3.872340_g24412_i0 PRJEB14803 24878 223 3.87234 8.6353182 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 396 7.939999999999995e-106   NTclustered gi|300078496|gb|GU001158.1| 5778 g24412 i0 98.655 20.2825112107623 223 3 100 0 1 223 4381 4159 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4523 396 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21698206 21698206 PRJEB14803_P_NODE_38138_length_170_cov_1.829630_g37672_i0 PRJEB14803 38138 170 1.82963 3.110371 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 281 1.67e-71   NTclustered gi|423291980|gb|JQ519435.1| 5778 g37672 i0 96.471 85.7764705882353 170 6 100 0 1 170 412 581 Vermamoeba vermiformis clone JG10.93_f2 actin gene, partial cds blastn 14582 281 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22973409 22973409 PRJEB14803_P_NODE_25819_length_218_cov_1.393443_g25353_i0 PRJEB14803 25819 218 1.393443 3.03770574 Copromyxa protea 931554 Tubulinea other_Eukaryota 302 1.73e-77   NTclustered gi|508737347|dbj|AB766053.1| 931554 g25353 i0 91.705 9.41743119266055 217 18 99 0 1 217 256 40 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 2053 302 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;