RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB14664" and tax_phylum = "Ignavibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB14664 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27917389 27917389 PRJEB14664_P_NODE_5365_length_364_cov_1.656535_g5235_i0 PRJEB14664 5365 364 1.656535 6.0297874 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 57 1.43e-6   NR QQS36930.1 2049428 g5235 i0 52.7 0.453296703296703 55 26 45.3 0 307 143 451 505 QQS36930.1 MAG: hypothetical protein IPM56_02960 [Ignavibacteriales bacterium] diamond 165 57 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
29843506 29843506 PRJEB14664_P_NODE_12591_length_206_cov_1.111111_g12461_i0 PRJEB14664 12591 206 1.111111 2.28888866 Ignavibacteria bacterium 2053306 Bacteria Bacteria 52.8 6.56e-6   NR MCX8056616.1 2053306 g12461 i0 35.8 2.92718446601942 67 39 97.6 1 2 202 186 248 MCX8056616.1 beta-lactamase family protein [Ignavibacteria bacterium] diamond 603 52.8 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
30538545 30538545 PRJEB14664_P_NODE_20253_length_150_cov_2.086957_g20123_i0 PRJEB14664 20253 150 2.086957 3.1304355 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 58.9 2.07e-8   NR MCE2755055.1 2026749 g20123 i0 66 2 50 12 100 1 1 150 553 597 MCE2755055.1 V-type H(+)-translocating pyrophosphatase [Ignavibacteriota bacterium] diamond 300 58.9 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;