RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB14664" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB14664 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5123718 5123718 PRJEB14664_P_NODE_9045_length_259_cov_2.575893_g8915_i0 PRJEB14664 9045 259 2.575893 6.67156287 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 69.4 2.34e-7   NTclustered gi|226088597|dbj|AP009153.1| 379066 g8915 i0 78.07 1.49034749034749 114 22 44 2 145 258 780872 780762 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 386 69.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
16598012 16598012 PRJEB14664_P_NODE_15554_length_178_cov_2.706294_g15424_i0 PRJEB14664 15554 178 2.706294 4.81720332 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 268 1.3699999999999999e-67   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g15424 i0 93.82 59.3314606741573 178 11 100 0 1 178 2074718 2074895 Gemmatimonas phototrophica strain AP64, complete genome blastn 10561 268 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
29559222 29559222 PRJEB14664_P_NODE_15870_length_176_cov_1.191489_g15740_i0 PRJEB14664 15870 176 1.191489 2.09702064 Longimicrobiales bacterium 2910168 Bacteria Bacteria 62 3.51e-10   NR HEX6941005.1 2910168 g15740 i0 47.4 3.78409090909091 57 30 97.2 0 172 2 31 87 HEX6941005.1 Hsp20/alpha crystallin family protein [Longimicrobiales bacterium] diamond 666 62 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
30001614 30001614 PRJEB14664_P_NODE_12471_length_207_cov_1.627907_g12341_i0 PRJEB14664 12471 207 1.627907 3.36976749 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 55.5 7.36e-7   NR MEE8549818.1 2026742 g12341 i0 48.9 1.30434782608696 47 23 66.7 1 205 68 123 169 MEE8549818.1 DUF4215 domain-containing protein [Gemmatimonadota bacterium] diamond 270 55.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;