RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

32 rows where bioproject = "PRJEB14664", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 32 ✖

tax_kingdom 1

  • Metazoa · 32 ✖

tax_clade 1

bioproject 1

  • PRJEB14664 · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21159 21159 PRJEB14664_P_NODE_1221_length_841_cov_1.756824_g1133_i0 PRJEB14664 1221 841 1.756824 14.77488984 Metazoa 33208 Nematoda Nematoda 247 3.4e-77   NR TKR94956.1 34508 g1133 i0 52.2 22.8799048751486 247 116 88.1 1 101 841 10 254 TKR94956.1 hypothetical protein L596_009182 [Steinernema carpocapsae] diamond 19242 247 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
2571178 2571178 PRJEB14664_P_NODE_8723_length_266_cov_1.558442_g8593_i0 PRJEB14664 8723 266 1.558442 4.14545572 Pristionchus maupasi 335527 Nematoda Nematoda 165 2.99e-36   NTclustered gi|150982229|gb|EF634703.1| 335527 g8593 i0 79.916 4.53007518796993 239 36 88 11 2 234 236 4 Pristionchus maupasi large subunit ribosomal protein 30 (rpl-30) mRNA, partial cds blastn 1205 165 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus maupasi
3847437 3847437 PRJEB14664_P_NODE_2324_length_602_cov_2.259259_g2211_i0 PRJEB14664 2324 602 2.259259 13.60073918 Strongyloides ratti 34506 Nematoda Nematoda 525 2.92e-144   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g2211 i0 82.508 280.503322259136 606 98 100 7 1 602 1542 941 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 168863 525 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
6399374 6399374 PRJEB14664_P_NODE_2386_length_593_cov_4.872760_g2272_i0 PRJEB14664 2386 593 4.87276 28.8954668 Stegelleta sp. JB-75 345507 Nematoda Nematoda 135 5.660000000000001e-27   NTclustered gi|76560679|gb|DQ145704.1| 345507 g2272 i0 76.604 32.8836424957842 265 50 43 12 52 308 102 362 Stegelleta sp. JB-75 28S ribosomal RNA gene, partial sequence blastn 19500 135 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Cephalobidae Stegelleta Stegelleta sp. JB-75
7673394 7673394 PRJEB14664_P_NODE_15727_length_177_cov_1.408451_g15597_i0 PRJEB14664 15727 177 1.408451 2.49295827 Opisthokonta 33154 Nematoda Nematoda 114 2.68e-28   NR CAD5219705.1 6326 g15597 i0 84.5 76.5762711864407 58 9 98.3 0 176 3 391 448 CAD5219705.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 13554 115 0.991304347826087 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
8948126 8948126 PRJEB14664_P_NODE_13128_length_200_cov_1.696970_g12998_i0 PRJEB14664 13128 200 1.69697 3.39394 Caenorhabditis brenneri 135651 Nematoda Nematoda 193 9.81e-45   NTclustered gi|189484012|gb|EU711255.1| 135651 g12998 i0 84.264 72.47 197 31 99 0 3 199 599 403 Caenorhabditis brenneri clone 4B7.08 glyceraldehyde-3-phosphate dehydrogenase (gpd-3) mRNA, partial cds blastn 14494 193 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri
9913911 9913911 PRJEB14664_P_NODE_12508_length_207_cov_1.162791_g12378_i0 PRJEB14664 12508 207 1.162791 2.40697737 Opisthokonta 33154 Nematoda Nematoda 111 8.58e-28   NR KJH46060.1 29172 g12378 i0 68.7 36.0869565217391 67 21 97.1 0 204 4 1 67 KJH46060.1 ribosomal protein L37e [Dictyocaulus viviparus] diamond 7470 112 0.991071428571429 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Dictyocaulus Dictyocaulus viviparus
12774787 12774787 PRJEB14664_P_NODE_17591_length_164_cov_1.240310_g17461_i0 PRJEB14664 17591 164 1.24031 2.0341084 Necator americanus 51031 Nematoda Nematoda 89.8 1.04e-13   NTclustered gi|2707584754|ref|XM_064198489.1| 51031 g17461 i0 85.882 1.72560975609756 85 10 51 2 23 106 129 46 Necator americanus uncharacterized protein (RB195_001614), partial mRNA blastn 283 89.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
16288444 16288444 PRJEB14664_P_NODE_1813_length_687_cov_3.144172_g1708_i0 PRJEB14664 1813 687 3.144172 21.60046164 Metazoa 33208 Nematoda Nematoda 569 1.53e-157   NTclustered gi|1972263928|ref|NM_171139.8| 6239 g1708 i0 81.686 385.186317321688 688 122 100 4 2 687 1546 861 Caenorhabditis elegans Ubiquitin-related (ubq-1), mRNA blastn 264623 571 0.996497373029772 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
17872744 17872744 PRJEB14664_P_NODE_10175_length_239_cov_0.980392_g10045_i0 PRJEB14664 10175 239 0.980392 2.34313688 Strongyloides ratti 34506 Nematoda Nematoda 191 4.36e-44   NTclustered gi|1376154927|ref|XM_024651418.1| 34506 g10045 i0 82.018 184.548117154812 228 37 95 4 9 234 10 235 Strongyloides ratti Histone H3 (SRAE_X000165500), partial mRNA blastn 44107 191 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
17872800 17872800 PRJEB14664_P_NODE_16375_length_172_cov_1.751825_g16245_i0 PRJEB14664 16375 172 1.751825 3.013139 Rhabditida 6236 Nematoda Nematoda 90.5 4.83e-20   NR KAF8359347.1 54126 g16245 i0 71.4 8.94767441860465 56 16 97.7 0 171 4 207 262 KAF8359347.1 arx-4, partial [Pristionchus pacificus] diamond 1539 90.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
17872873 17872873 PRJEB14664_P_NODE_4775_length_394_cov_1.350975_g4645_i0 PRJEB14664 4775 394 1.350975 5.3228415 Opisthokonta 33154 Nematoda Nematoda 225 3.59e-72   NR VBB31859.1 6277 g4645 i0 84.6 170.192893401015 130 20 99 0 3 392 65 194 VBB31859.1 unnamed protein product [Acanthocheilonema viteae] diamond 67056 226 0.995575221238938 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
19146661 19146661 PRJEB14664_P_NODE_12416_length_208_cov_1.156069_g12286_i0 PRJEB14664 12416 208 1.156069 2.40462352 Caenorhabditis remanei 31234 Nematoda Nematoda 158 3.7499999999999998e-34   NTclustered gi|2445384510|ref|XM_053733110.1| 31234 g12286 i0 80.288 19.6394230769231 208 41 100 0 1 208 200 407 Caenorhabditis remanei uncharacterized protein (GCK72_019590), partial mRNA blastn 4085 158 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
26621474 26621474 PRJEB14664_P_NODE_11021_length_226_cov_1.455497_g10891_i0 PRJEB14664 11021 226 1.455497 3.28942322 Aphelenchoides avenae 70226 Nematoda Nematoda 49.7 1.02e-4   NR KAH7702066.1 70226 g10891 i0 43.5 2.65486725663717 46 26 61.1 0 168 31 270 315 KAH7702066.1 thaumatin-like protein [Aphelenchoides avenae] diamond 600 49.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
26875161 26875161 PRJEB14664_P_NODE_2041_length_644_cov_3.085386_g1932_i0 PRJEB14664 2041 644 3.085386 19.86988584 Anisakis simplex 6269 Nematoda Nematoda 221 2.06e-69   NR VDK28147.1 6269 g1932 i0 86.5 0.58695652173913 126 17 58.7 0 380 3 61 186 VDK28147.1 unnamed protein product, partial [Anisakis simplex] diamond 378 221 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
27222475 27222475 PRJEB14664_P_NODE_12783_length_204_cov_1.171598_g12653_i0 PRJEB14664 12783 204 1.171598 2.39005992 Caenorhabditis angaria 860376 Nematoda Nematoda 56.6 7.14e-8   NR CAI5455974.1 860376 g12653 i0 41.8 0.985294117647059 67 31 95.6 2 8 202 93 153 CAI5455974.1 unnamed protein product [Caenorhabditis angaria] diamond 201 56.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis angaria
27285890 27285890 PRJEB14664_P_NODE_1403_length_780_cov_3.645638_g1307_i0 PRJEB14664 1403 780 3.645638 28.4359764 Anisakis simplex 6269 Nematoda Nematoda 294 3.25e-97   NR VDK27636.1 6269 g1307 i0 98.1 0.596153846153846 155 3 59.6 0 121 585 82 236 VDK27636.1 unnamed protein product, partial [Anisakis simplex] diamond 465 294 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
27633452 27633452 PRJEB14664_P_NODE_6764_length_314_cov_2.580645_g6634_i0 PRJEB14664 6764 314 2.580645 8.1032253 Meloidogyne graminicola 189291 Nematoda Nematoda 47 0.0024   NR AVZ46778.1 189291 g6634 i0 31.7 0.964968152866242 101 69 96.5 0 12 314 146 246 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 303 47 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
28359387 28359387 PRJEB14664_P_NODE_15286_length_180_cov_3.365517_g15156_i0 PRJEB14664 15286 180 3.365517 6.0579306 Trichuris suis 68888 Nematoda Nematoda 52.4 6.21e-6   NR KFD67761.1 68888 g15156 i0 48.8 0.716666666666667 43 22 71.7 0 169 41 356 398 KFD67761.1 hypothetical protein M514_20056 [Trichuris suis] diamond 129 52.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
28485861 28485861 PRJEB14664_P_NODE_18407_length_159_cov_1.290323_g18277_i0 PRJEB14664 18407 159 1.290323 2.05161357 Pristionchus pacificus 54126 Nematoda Nematoda 42.7 0.0118   NR KAF8373420.1 54126 g18277 i0 60 1.69811320754717 30 12 56.6 0 63 152 524 553 KAF8373420.1 plst-1 [Pristionchus pacificus] diamond 270 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
28738463 28738463 PRJEB14664_P_NODE_2067_length_640_cov_2.783471_g1958_i0 PRJEB14664 2067 640 2.783471 17.8142144 Aphelenchoides bicaudatus 293665 Nematoda Nematoda 236 5.499999999999998e-75   NR KAI6182696.1 293665 g1958 i0 61.3 6.525 199 75 93.3 1 43 639 15 211 KAI6182696.1 Ribosomal protein L1 domain containing protein [Aphelenchoides bicaudatus] diamond 4176 236 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides bicaudatus
28991336 28991336 PRJEB14664_P_NODE_17568_length_164_cov_1.434109_g17438_i0 PRJEB14664 17568 164 1.434109 2.35193876 Meloidogyne sp. 95F6 2291855 Nematoda Nematoda 48.9 8.1e-5   NR AXL07908.1 2291855 g17438 i0 95.8 0.878048780487805 24 1 43.9 0 163 92 123 146 AXL07908.1 heat shock protein hsp-90, partial [Meloidogyne sp. 95F6] diamond 144 48.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne sp. 95F6
29111078 29111078 PRJEB14664_P_NODE_18168_length_160_cov_1.808000_g18038_i0 PRJEB14664 18168 160 1.808 2.8928 Metazoa 33208 Nematoda Nematoda 76.3 1.5e-14   NR ETN82237.1 51031 g18038 i0 66 2.85 50 17 93.8 0 4 153 190 239 ETN82237.1 eukaryotic aspartyl protease [Necator americanus] diamond 456 76.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
29331991 29331991 PRJEB14664_P_NODE_7649_length_290_cov_1.878431_g7519_i0 PRJEB14664 7649 290 1.878431 5.4474499 Metazoa 33208 Nematoda Nematoda 53.9 7.52e-6   NR VDP34186.1 6339 g7519 i0 36.8 2.60689655172414 76 45 75.5 1 40 258 3 78 VDP34186.1 unnamed protein product [Heligmosomoides polygyrus] diamond 756 53.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
29559220 29559220 PRJEB14664_P_NODE_14130_length_191_cov_1.025641_g14000_i0 PRJEB14664 14130 191 1.025641 1.95897431 Loa loa 7209 Nematoda Nematoda 45.1 0.00284   NR XP_020302400.1 7209 g14000 i0 65.5 0.455497382198953 29 10 45.5 0 170 84 403 431 XP_020302400.1 ctsf protein [Loa loa] diamond 87 45.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
30222554 30222554 PRJEB14664_P_NODE_17372_length_165_cov_1.623077_g17242_i0 PRJEB14664 17372 165 1.623077 2.67807705 Caenorhabditis auriculariae 2777116 Nematoda Nematoda 42.4 0.0101   NR CAD6187414.1 2777116 g17242 i0 67.9 0.909090909090909 28 9 50.9 0 160 77 19 46 CAD6187414.1 unnamed protein product [Caenorhabditis auriculariae] diamond 150 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis auriculariae
30349584 30349584 PRJEB14664_P_NODE_4612_length_403_cov_1.809783_g4483_i0 PRJEB14664 4612 403 1.809783 7.29342549 Caenorhabditis remanei 31234 Nematoda Nematoda 61.6 5.2e-8   NR XP_053581641.1 31234 g4483 i0 34.2 1.90570719602978 120 79 89.3 0 380 21 340 459 XP_053581641.1 hypothetical protein GCK72_018759 [Caenorhabditis remanei] diamond 768 61.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
31075843 31075843 PRJEB14664_P_NODE_7495_length_294_cov_1.544402_g7365_i0 PRJEB14664 7495 294 1.544402 4.54054188 Meloidogyne graminicola 189291 Nematoda Nematoda 80.5 1.16e-15   NR AVZ46778.1 189291 g7365 i0 53.4 0.897959183673469 88 41 89.8 0 24 287 117 204 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 264 80.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
31480716 31480716 PRJEB14664_P_NODE_6456_length_324_cov_1.432526_g6326_i0 PRJEB14664 6456 324 1.432526 4.64138424 Rhabditida 6236 Nematoda Nematoda 144 3e-37   NR KAF7631213.1 189291 g6326 i0 72.2 15 108 28 100 1 1 324 527 632 KAF7631213.1 hypothetical protein Mgra_00008540 [Meloidogyne graminicola] diamond 4860 145 0.993103448275862 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
31581779 31581779 PRJEB14664_P_NODE_15856_length_176_cov_1.418440_g15726_i0 PRJEB14664 15856 176 1.41844 2.4964544 Heligmosomoides polygyrus 6339 Nematoda Nematoda 63.9 1.53e-10   NR VDP10734.1 6339 g15726 i0 59.6 3.01704545454545 47 19 80.1 0 2 142 137 183 VDP10734.1 unnamed protein product, partial [Heligmosomoides polygyrus] diamond 531 63.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
31613281 31613281 PRJEB14664_P_NODE_6956_length_308_cov_2.410256_g6826_i0 PRJEB14664 6956 308 2.410256 7.42358848 Ditylenchus destructor 166010 Nematoda Nematoda 117 3.56e-28   NR KAI1716765.1 166010 g6826 i0 52 0.993506493506494 102 49 99.4 0 307 2 608 709 KAI1716765.1 elongation factor tu GTP binding domain-containing protein [Ditylenchus destructor] diamond 306 117 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
31701813 31701813 PRJEB14664_P_NODE_6017_length_338_cov_1.481848_g5887_i0 PRJEB14664 6017 338 1.481848 5.00864624 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 130 7.789999999999998e-35   NR XP_024500476.1 34506 g5887 i0 70.9 7.57988165680473 86 25 76.3 0 334 77 171 256 XP_024500476.1 40S ribosomal protein S4 [Strongyloides ratti] diamond 2562 131 0.99236641221374 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;