RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB14664", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 4 ✖

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJEB14664 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26741407 26741407 PRJEB14664_P_NODE_12801_length_203_cov_2.428571_g12671_i0 PRJEB14664 12801 203 2.428571 4.92999913 root 1 Root_unresolved Root_unresolved 53.1 2.5e-6   NR XP_001317694.2 412133 g12671 i0 50 3.26600985221675 60 27 84.2 2 16 186 115 174 XP_001317694.2 Golgi to endosome transport [Trichomonas vaginalis G3] diamond 663 53.1 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
29338404 29338404 PRJEB14664_P_NODE_15609_length_178_cov_1.398601_g15479_i0 PRJEB14664 15609 178 1.398601 2.48950978 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 72.8 2.99e-13   NR XP_067773220.1 135588 g15479 i0 52.5 0.99438202247191 59 28 99.4 0 2 178 120 178 XP_067773220.1 CAMK family protein kinase [Histomonas meleagridis] diamond 177 72.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
30064526 30064526 PRJEB14664_P_NODE_12572_length_206_cov_1.403509_g12442_i0 PRJEB14664 12572 206 1.403509 2.89122854 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 58.2 7.89e-9   NR XP_001303734.1 412133 g12442 i0 42.6 1.96601941747573 68 38 99 1 204 1 31 97 XP_001303734.1 structural constituent of ribosome [Trichomonas vaginalis G3] diamond 405 58.2 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32776423 32776423 PRJEB14664_P_NODE_20060_length_151_cov_1.724138_g19930_i0 PRJEB14664 20060 151 1.724138 2.60344838 root 1 Root_unresolved Root_unresolved 62 1.69e-9   NR AAB39487.1 5722 g19930 i0 75 8.50331125827815 36 9 71.5 0 109 2 260 295 AAB39487.1 chaperonin 60, partial [Trichomonas vaginalis] diamond 1284 62.4 0.993589743589744 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;