RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB14664", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJEB14664 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28391102 28391102 PRJEB14664_P_NODE_10786_length_229_cov_1.649485_g10656_i0 PRJEB14664 10786 229 1.649485 3.77732065 Chlorobium phaeobacteroides 1096 Bacteria Bacteria 122 5.88e-33   NR WP_011744526.1 1096 g10656 i0 69.4 1.89956331877729 72 22 94.3 0 11 226 1 72 WP_011744526.1 DUF1643 domain-containing protein [Chlorobium phaeobacteroides] diamond 435 122 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeobacteroides
30443947 30443947 PRJEB14664_P_NODE_14173_length_190_cov_2.006452_g14043_i0 PRJEB14664 14173 190 2.006452 3.8122588 Chlorobium phaeobacteroides 1096 Bacteria Bacteria 92 1.92e-21   NR WP_011744526.1 1096 g14043 i0 69.4 0.978947368421053 62 19 97.9 0 3 188 107 168 WP_011744526.1 DUF1643 domain-containing protein [Chlorobium phaeobacteroides] diamond 186 92 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeobacteroides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;