RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJEB14175", tax_phylum = "Promethearchaeota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

  • Promethearchaeota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB14175 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
33028783 33028783 PRJEB14175_P_NODE_204452_length_225_cov_1.182927_g202185_i0 PRJEB14175 204452 225 1.182927 2.66158575 Promethearchaeota archaeon 2053489 Archaea Archaea 43.5 0.0146   NR MBD3352441.1 2053489 g202185 i0 34.7 1 75 43 93.3 2 3 212 96 169 MBD3352441.1 hypothetical protein [Promethearchaeota archaeon] diamond 225 43.5 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
33062395 33062395 PRJEB14175_P_NODE_155205_length_270_cov_9.272727_g152938_i0 PRJEB14175 155205 270 9.272727 25.0363629 Promethearchaeia archaeon 3067280 Archaea Archaea 46.6 9.42e-4   NR HEY0087823.1 3067280 g152938 i0 59.4 0.355555555555556 32 13 35.6 0 117 22 1 32 HEY0087823.1 hypothetical protein [Promethearchaeia archaeon] diamond 96 46.6 1 Archaea   Promethearchaeati Promethearchaeota Promethearchaeia       Promethearchaeia archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;