RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

21 rows where bioproject = "PRJEB14175" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 21 ✖

tax_clade 1

bioproject 1

  • PRJEB14175 · 21 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25501237 25501237 PRJEB14175_P_NODE_107049_length_343_cov_4.141844_g104783_i0 PRJEB14175 107049 343 4.141844 14.20652492 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 80.5 1.49e-10   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g104783 i0 92.727 3.29737609329446 55 4 16 0 276 330 4250 4196 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1131 80.5 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
25508198 25508198 PRJEB14175_P_NODE_264409_length_196_cov_28.762963_g262141_i0 PRJEB14175 264409 196 28.762963 56.37540748 Vrihiamoeba italica 660567 Heterolobosea other_Eukaryota 178 2.68e-40   NTclustered gi|254587474|dbj|AB513361.1| 660567 g262141 i0 85.882 0.86734693877551 170 20 85 4 24 190 276 444 Vrihiamoeba italica genes for ITS1, 5.8S rRNA, ITS2, partial and complete sequence blastn 170 178 1 Eukaryota Discoba   Heterolobosea     Gruberellidae Vrihiamoeba Vrihiamoeba italica
25510140 25510140 PRJEB14175_P_NODE_52817_length_512_cov_56.909091_g50574_i0 PRJEB14175 52817 512 56.909091 291.37454592 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 195 7.869999999999999e-45   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g50574 i0 93.798 9.88671875 129 8 40 0 85 213 3856 3984 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5062 195 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
25783173 25783173 PRJEB14175_P_NODE_7019_length_1311_cov_7.449600_g5877_i0 PRJEB14175 7019 1311 7.4496 97.664256 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 1738 0   NTclustered gi|290991132|ref|XM_002678144.1| 5762 g5877 i0 91.373 37.0144927536232 1275 102 97 8 16 1285 1272 1 Naegleria gruberi ribosomal protein L3 (NAEGRDRAFT_79448), mRNA blastn 48526 1738 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
25880954 25880954 PRJEB14175_P_NODE_20691_length_805_cov_13.444892_g18829_i0 PRJEB14175 20691 805 13.444892 108.2313806 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.022   NTclustered gi|2119426133|ref|XM_044700988.1| 5763 g18829 i0 96.875 0.163975155279503 32 1 4 0 284 315 255 224 Naegleria fowleri uncharacterized protein (FDP41_010665), partial mRNA blastn 132 54.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
25911809 25911809 PRJEB14175_P_NODE_155476_length_270_cov_3.464115_g153209_i0 PRJEB14175 155476 270 3.464115 9.3531105 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 407 4.579999999999999e-109   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g153209 i0 95.019 67.937037037037 261 10 96 2 1 260 3291 3033 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18343 407 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
25915858 25915858 PRJEB14175_P_NODE_250524_length_203_cov_1.000000_g248256_i0 PRJEB14175 250524 203 1 2.03 Neovahlkampfia damariscottae 166956 Heterolobosea other_Eukaryota 163 7.83e-36   NTclustered gi|2877467367|gb|PQ835000.1| 166956 g248256 i0 92.241 57 116 7 57 2 88 203 13809 13696 Neovahlkampfia damariscottae strain CCAP:1588/7 mitochondrion, complete genome blastn 11571 163 1 Eukaryota Discoba   Heterolobosea     Neovahlkampfiidae Neovahlkampfia Neovahlkampfia damariscottae
26049444 26049444 PRJEB14175_P_NODE_191469_length_235_cov_1.701149_g189202_i0 PRJEB14175 191469 235 1.701149 3.99770015 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 387 5.08e-103   NTclustered gi|2031939661|emb|OD957602.1| 5763 g189202 i0 98.624 0.927659574468085 218 3 93 0 18 235 736 519 Naegleria fowleri Karachi_NF001 strain blastn 218 387 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
26052011 26052011 PRJEB14175_P_NODE_252637_length_203_cov_0.901408_g250369_i0 PRJEB14175 252637 203 0.901408 1.82985824 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 148 2.19e-31   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g250369 i0 90.351 22.9261083743842 114 9 56 2 21 133 3859 3971 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4654 148 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
26052100 26052100 PRJEB14175_P_NODE_25477_length_731_cov_49.871642_g23481_i0 PRJEB14175 25477 731 49.871642 364.56170302 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 331 8.39e-86   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g23481 i0 88.686 25.2448700410397 274 27 45 4 274 544 2923 3195 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18454 331 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
26152216 26152216 PRJEB14175_P_NODE_144869_length_283_cov_3.162162_g142602_i0 PRJEB14175 144869 283 3.162162 8.94891846 Lula 2867467 Heterolobosea other_Eukaryota 56.5 0.002   NTclustered gi|2043511952|gb|MZ264848.1| 2833413 g142602 i0 97.059 0.360424028268551 34 0 12 1 186 218 1139 1172 Lula jakobsenorum strain HFCC 219 small subunit ribosomal RNA gene, partial sequence blastn 102 56.5 1 Eukaryota Discoba   Heterolobosea     Percolomonadidae Lula Lula jakobsenorum
26319065 26319065 PRJEB14175_P_NODE_140191_length_289_cov_4.622807_g137924_i0 PRJEB14175 140191 289 4.622807 13.35991223 Allovahlkampfia sp. strain SO/1P 500012 Heterolobosea other_Eukaryota 464 2.9e-126   NTclustered gi|701726755|gb|KM220721.1| 500012 g137924 i0 98.134 30.2698961937716 268 1 91 3 22 285 15 282 Allovahlkampfia sp. strain SO/1P isolate 164A 18S ribosomal RNA gene, partial sequence blastn 8748 464 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. strain SO/1P
26319825 26319825 PRJEB14175_P_NODE_156183_length_269_cov_5.009615_g153916_i0 PRJEB14175 156183 269 5.009615 13.47586435 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 60.5 2.13e-8   NR XP_044548343.1 51637 g153916 i0 71.8 0.434944237918216 39 11 43.5 0 26 142 246 284 XP_044548343.1 uncharacterized protein C9374_005244 [Naegleria lovaniensis] diamond 117 60.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
26454028 26454028 PRJEB14175_P_NODE_113224_length_331_cov_8.688889_g110958_i0 PRJEB14175 113224 331 8.688889 28.76022259 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 176 1.77e-39   NTclustered gi|290994111|ref|XM_002679630.1| 5762 g110958 i0 79.457 0.779456193353474 258 45 77 8 64 317 1639 1892 Naegleria gruberi PAP2_haloperoxidase domain-containing protein (NAEGRDRAFT_47373), partial mRNA blastn 258 176 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
26459140 26459140 PRJEB14175_P_NODE_224048_length_211_cov_1.280000_g221780_i0 PRJEB14175 224048 211 1.28 2.7008 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 235 1.71e-57   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g221780 i0 87.324 96.0758293838863 213 17 99 7 4 211 3100 2893 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 20272 235 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
26462338 26462338 PRJEB14175_P_NODE_46928_length_544_cov_96.496894_g44702_i0 PRJEB14175 46928 544 96.496894 524.94310336 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 76.8 3.17e-9   NTclustered gi|2031941995|emb|OD958022.1| 5763 g44702 i0 97.727 0.0808823529411765 44 1 8 0 501 544 250 293 Naegleria fowleri Karachi_NF001 strain blastn 44 76.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
26464156 26464156 PRJEB14175_P_NODE_78560_length_412_cov_44.071225_g76299_i0 PRJEB14175 78560 412 44.071225 181.573447 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 534 3.22e-147   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g76299 i0 91.162 28.3543689320388 396 32 96 3 19 412 2025 2419 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11682 534 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
33008186 33008186 PRJEB14175_P_NODE_88411_length_385_cov_7.179012_g86146_i0 PRJEB14175 88411 385 7.179012 27.6391962 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 61.2 8.29e-9   NR ABU95429.1 194530 g86146 i0 64.6 0.654545454545455 48 12 33.5 1 335 207 100 147 ABU95429.1 IscU, partial [Sawyeria marylandensis] diamond 252 61.6 0.993506493506494 Eukaryota Discoba   Heterolobosea     Psalteriomonadidae Sawyeria Sawyeria marylandensis
33041995 33041995 PRJEB14175_P_NODE_153788_length_272_cov_3.516588_g151521_i0 PRJEB14175 153788 272 3.516588 9.56511936 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 80.5 2.78e-15   NR XP_002680808.1 5762 g151521 i0 47.2 4.09191176470588 72 38 79.4 0 17 232 631 702 XP_002680808.1 uncharacterized protein NAEGRDRAFT_78645 [Naegleria gruberi] diamond 1113 81.3 0.990159901599016 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
33062939 33062939 PRJEB14175_P_NODE_218581_length_214_cov_5.941176_g216313_i0 PRJEB14175 218581 214 5.941176 12.71411664 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 85.5 2.11e-17   NR XP_044542748.1 51637 g216313 i0 66.1 1.71028037383178 62 21 86.9 0 21 206 486 547 XP_044542748.1 uncharacterized protein C9374_012037 [Naegleria lovaniensis] diamond 366 85.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
33063082 33063082 PRJEB14175_P_NODE_234813_length_207_cov_1.164384_g232545_i0 PRJEB14175 234813 207 1.164384 2.41027488 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 69.3 7.37e-13   NR XP_002676383.1 5762 g232545 i0 49.2 10.1014492753623 65 29 88.4 1 198 16 82 146 XP_002676383.1 uncharacterized protein NAEGRDRAFT_39417 [Naegleria gruberi] diamond 2091 69.3 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;