RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB14175", tax_kingdom = "Fungi" and tax_phylum = "Olpidiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 7 ✖

tax_kingdom 1

  • Fungi · 7 ✖

tax_clade 1

bioproject 1

  • PRJEB14175 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25510185 25510185 PRJEB14175_P_NODE_53561_length_508_cov_5951.612975_g51315_i0 PRJEB14175 53561 508 5951.612975 30234.193913 Olpidium brassicae 70189 Fungi Fungi 654 0   NTclustered gi|311235549|ref|NG_027564.1| 70189 g51315 i0 90 100.248031496063 510 45 100 6 1 508 2093 1588 Olpidium brassicae DUKE DUH0009361 28S rRNA gene, partial sequence; from reference material blastn 50926 654 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
25879075 25879075 PRJEB14175_P_NODE_110395_length_336_cov_16562.767273_g108129_i0 PRJEB14175 110395 336 16562.767273 55650.89803728 Fungi 4751 Fungi Fungi 213 1.37e-50   NTclustered gi|311235549|ref|NG_027564.1| 70189 g108129 i0 98.361 54.1666666666667 122 1 56 1 1 122 2335 2215 Olpidium brassicae DUKE DUH0009361 28S rRNA gene, partial sequence; from reference material blastn 18200 215 0.990697674418605 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
25883730 25883730 PRJEB14175_P_NODE_93803_length_372_cov_2.138264_g91537_i0 PRJEB14175 93803 372 2.138264 7.95434208 Fungi 4751 Fungi Fungi 243 1.9600000000000002e-59   NTclustered gi|311235549|ref|NG_027564.1| 70189 g91537 i0 88.35 60.5161290322581 206 18 55 6 2 206 1638 1838 Olpidium brassicae DUKE DUH0009361 28S rRNA gene, partial sequence; from reference material blastn 22512 243 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
26015531 26015531 PRJEB14175_P_NODE_113316_length_331_cov_5.529630_g111050_i0 PRJEB14175 113316 331 5.52963 18.3030753 Fungi 4751 Fungi Fungi 215 3.76e-51   NTclustered gi|311235549|ref|NG_027564.1| 70189 g111050 i0 98.361 48.7129909365559 122 2 37 0 23 144 3116 3237 Olpidium brassicae DUKE DUH0009361 28S rRNA gene, partial sequence; from reference material blastn 16124 215 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
26190869 26190869 PRJEB14175_P_NODE_57382_length_490_cov_6677.412587_g55132_i0 PRJEB14175 57382 490 6677.412587 32719.3216763 Olpidium brassicae 70189 Fungi Fungi 736 0   NTclustered gi|311235549|ref|NG_027564.1| 70189 g55132 i0 93.878 100.167346938776 490 27 100 2 1 490 2093 1607 Olpidium brassicae DUKE DUH0009361 28S rRNA gene, partial sequence; from reference material blastn 49082 736 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
26321009 26321009 PRJEB14175_P_NODE_182735_length_242_cov_3.337017_g180468_i0 PRJEB14175 182735 242 3.337017 8.07558114 Olpidium bornovanus 278681 Fungi Fungi 144 4.62e-41   NR KAG5458586.1 278681 g180468 i0 88.8 1.98347107438017 80 9 99.2 0 240 1 115 194 KAG5458586.1 MAG: DHS-like NAD/FAD-binding domain-containing protein [Olpidium bornovanus] diamond 480 144 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
33132108 33132108 PRJEB14175_P_NODE_72231_length_433_cov_2.782258_g69972_i0 PRJEB14175 72231 433 2.782258 12.04717714 Olpidium bornovanus 278681 Fungi Fungi 100 2.84e-24   NR KAG5458609.1 278681 g69972 i0 74.1 0.561200923787529 81 21 56.1 0 376 134 1 81 KAG5458609.1 MAG: tropomyosin, partial [Olpidium bornovanus] diamond 243 100 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;