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contig_metadata

27 rows where bioproject = "PRJEB14175", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 27 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 27 ✖

bioproject 1

  • PRJEB14175 · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25504886 25504886 PRJEB14175_P_NODE_183609_length_241_cov_7.305556_g181342_i0 PRJEB14175 183609 241 7.305556 17.60638996 Bacteria 2 Bacteria Bacteria 110 5.01e-26   NR PIS02500.1 1973936 g181342 i0 70.6 1.6804979253112 68 20 84.6 0 220 17 173 240 PIS02500.1 MAG: RIP metalloprotease RseP [Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_42_34] diamond 405 110 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_42_34
25640179 25640179 PRJEB14175_P_NODE_170202_length_254_cov_3.891192_g167935_i0 PRJEB14175 170202 254 3.891192 9.88362768 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 226 1.2799999999999999e-54   NTclustered gi|2874253811|emb|OY969795.1| 464461 g167935 i0 86.603 28.7007874015748 209 22 81 6 1 205 654899 655105 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 7290 226 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
26049921 26049921 PRJEB14175_P_NODE_201757_length_227_cov_1.361446_g199490_i0 PRJEB14175 201757 227 1.361446 3.09048242 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 292 1.0899999999999999e-74   NTclustered gi|2874253811|emb|OY969795.1| 464461 g199490 i0 89.912 49.3171806167401 228 22 100 1 1 227 2060675 2060902 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 11195 292 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
26050705 26050705 PRJEB14175_P_NODE_220125_length_213_cov_4.750000_g217857_i0 PRJEB14175 220125 213 4.75 10.1175 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 226 1.04e-54   NTclustered gi|2874253811|emb|OY969795.1| 464461 g217857 i0 87.755 46.4976525821596 196 21 91 3 21 213 655388 655193 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 9904 226 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
26423982 26423982 PRJEB14175_P_NODE_138519_length_291_cov_12.286957_g136252_i0 PRJEB14175 138519 291 12.286957 35.75504487 Candidatus Protochlamydia 282132 Bacteria Bacteria 331 3.09e-86   NTclustered gi|1691252667|emb|BX908798.2| 264201 g136252 i0 88.971 148.776632302405 272 25 92 4 1 269 1251201 1251470 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 43294 331 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
26463905 26463905 PRJEB14175_P_NODE_7376_length_1281_cov_3.527869_g6195_i0 PRJEB14175 7376 1281 3.527869 45.19200189 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 127 1.09e-30   NR MBA3238123.1 2052176 g6195 i0 75.3 0.199063231850117 85 19 19.4 1 58 306 95 179 MBA3238123.1 elongation factor P hydroxylase [Parachlamydiaceae bacterium] diamond 255 127 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
26560340 26560340 PRJEB14175_P_NODE_158896_length_266_cov_3.746341_g156629_i0 PRJEB14175 158896 266 3.746341 9.96526706 Parachlamydia 83551 Bacteria Bacteria 209 1.36e-49   NTclustered gi|470491594|ref|NR_077046.1| 83552 g156629 i0 82.773 17.5902255639098 238 38 89 3 18 255 1404 1638 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 4679 209 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
32908853 32908853 PRJEB14175_P_NODE_178209_length_246_cov_7.367568_g175942_i0 PRJEB14175 178209 246 7.367568 18.12421728 Parachlamydia sp. 2052048 Bacteria Bacteria 72 4.39e-13   NR PJD95796.1 2052048 g175942 i0 65.3 1.81707317073171 49 17 59.8 0 97 243 1 49 PJD95796.1 MAG: hypothetical protein CK425_07785 [Parachlamydia sp.] diamond 447 72 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.
32956875 32956875 PRJEB14175_P_NODE_196474_length_231_cov_1.505882_g194207_i0 PRJEB14175 196474 231 1.505882 3.47858742 PVC group 1783257 Bacteria Bacteria 72.8 4.95e-13   NR WP_013944025.1 83561 g194207 i0 56 3.92207792207792 50 22 64.9 0 22 171 259 308 WP_013944025.1 signal recognition particle-docking protein FtsY [Simkania negevensis] diamond 906 73.2 0.994535519125683 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania negevensis
32961253 32961253 PRJEB14175_P_NODE_29162_length_688_cov_1.266348_g27092_i0 PRJEB14175 29162 688 1.266348 8.71247424 Chlamydiales bacterium 2047757 Bacteria Bacteria 201 9.88e-60   NR MCH9625611.1 2047757 g27092 i0 52 0.863372093023256 198 94 85.9 1 683 93 88 285 MCH9625611.1 Cysteine desulfurase IscS [Chlamydiales bacterium] diamond 594 201 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
32976814 32976814 PRJEB14175_P_NODE_110995_length_335_cov_47.992701_g108729_i0 PRJEB14175 110995 335 47.992701 160.77554835 Candidatus Neptunochlamydia sp. REUL1 3064277 Bacteria Bacteria 93.6 4.04e-22   NR WP_316358516.1 3064277 g108729 i0 53.7 4.18208955223881 67 31 60 0 24 224 40 106 WP_316358516.1 Grx4 family monothiol glutaredoxin [Candidatus Neptunochlamydia sp. REUL1] diamond 1401 93.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Candidatus Neptunichlamydia Candidatus Neptunichlamydia sp. REUL1
32977808 32977808 PRJEB14175_P_NODE_216683_length_216_cov_1.238710_g214416_i0 PRJEB14175 216683 216 1.23871 2.6756136 Chlamydiales bacterium 2047757 Bacteria Bacteria 107 7.140000000000001e-27   NR MCH9627527.1 2047757 g214416 i0 62 0.986111111111111 71 27 98.6 0 2 214 76 146 MCH9627527.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Chlamydiales bacterium] diamond 213 107 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
32994396 32994396 PRJEB14175_P_NODE_179683_length_245_cov_2.326087_g177416_i0 PRJEB14175 179683 245 2.326087 5.69891315 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 82.8 7.79e-17   NR HSW86219.1 2047756 g177416 i0 97.8 0.551020408163265 45 1 55.1 0 65 199 1 45 HSW86219.1 RNA methyltransferase [Rhabdochlamydiaceae bacterium] diamond 135 82.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
32995134 32995134 PRJEB14175_P_NODE_266107_length_194_cov_15.263158_g263839_i0 PRJEB14175 266107 194 15.263158 29.61052652 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 105 9.31e-26   NR HEX4839997.1 2047756 g263839 i0 84.2 2.64432989690722 57 9 88.1 0 2 172 151 207 HEX4839997.1 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Rhabdochlamydiaceae bacterium] diamond 513 105 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
32995506 32995506 PRJEB14175_P_NODE_60395_length_477_cov_20.826923_g58140_i0 PRJEB14175 60395 477 20.826923 99.34442271 Chlamydia psittaci 83554 Bacteria Bacteria 54.3 6.92e-7   NR EPP28797.1 1112246 g58140 i0 95.7 0.144654088050314 23 1 14.5 0 456 388 1 23 EPP28797.1 hypothetical protein CP082626L3_1669, partial [Chlamydia psittaci 08-2626_L3] diamond 69 54.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
33012086 33012086 PRJEB14175_P_NODE_245284_length_204_cov_3.797203_g243016_i0 PRJEB14175 245284 204 3.797203 7.74629412 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 86.7 1.27e-18   NR MEI8125483.1 2052176 g243016 i0 58.3 0.882352941176471 60 25 88.2 0 3 182 20 79 MEI8125483.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 180 86.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
33028294 33028294 PRJEB14175_P_NODE_151092_length_275_cov_7.322430_g148825_i0 PRJEB14175 151092 275 7.32243 20.1366825 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 96.3 5.7500000000000005e-21   NR WP_059060471.1 389348 g148825 i0 63.9 0.905454545454545 83 30 90.5 0 272 24 135 217 WP_059060471.1 hemolysin family protein [Candidatus Protochlamydia naegleriophila] diamond 249 96.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
33062306 33062306 PRJEB14175_P_NODE_146077_length_281_cov_22.777273_g143810_i0 PRJEB14175 146077 281 22.777273 64.00413713 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 58.2 2.14e-7   NR HNA62607.1 2047756 g143810 i0 81.8 0.65124555160142406 33 6 35.2 0 123 25 11 43 HNA62607.1 ISL3 family transposase [Rhabdochlamydiaceae bacterium] diamond 183 58.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
33079003 33079003 PRJEB14175_P_NODE_107806_length_341_cov_110.871429_g105540_i0 PRJEB14175 107806 341 110.871429 378.07157289 Chlamydiales bacterium 2047757 Bacteria Bacteria 69.7 4.01e-11   NR MDR2539955.1 2047757 g105540 i0 62.9 0.545454545454545 62 23 54.5 0 188 3 1 62 MDR2539955.1 ribonuclease R [Chlamydiales bacterium] diamond 186 69.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
33096105 33096105 PRJEB14175_P_NODE_106310_length_344_cov_25.279152_g104044_i0 PRJEB14175 106310 344 25.279152 86.96028288 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 125 1.6e-34   NR HEY5234713.1 2047756 g104044 i0 65 0.872093023255814 100 32 85.5 2 26 319 27 125 HEY5234713.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 300 125 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
33113301 33113301 PRJEB14175_P_NODE_133247_length_299_cov_2.777311_g130980_i0 PRJEB14175 133247 299 2.777311 8.30415989 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 55.1 2.01e-6   NR HUD02351.1 2047756 g130980 i0 51.6 0.642140468227425 64 28 61.2 2 12 194 46 109 HUD02351.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 192 55.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
33130307 33130307 PRJEB14175_P_NODE_115959_length_326_cov_28.690566_g113693_i0 PRJEB14175 115959 326 28.690566 93.53124516 Chlamydiota bacterium 2081524 Bacteria Bacteria 106 4.06e-27   NR MES2122733.1 2081524 g113693 i0 48.5 0.947852760736196 103 48 90.2 1 316 23 9 111 MES2122733.1 hypothetical protein [Chlamydiota bacterium] diamond 309 106 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
33144514 33144514 PRJEB14175_P_NODE_239791_length_206_cov_0.882759_g237523_i0 PRJEB14175 239791 206 0.882759 1.81848354 Candidatus Protochlamydia 282132 Bacteria Bacteria 83.2 1.05e-16   NR WP_068470338.1 1414722 g237523 i0 59.7 2.95631067961165 67 27 97.6 0 202 2 343 409 WP_068470338.1 tyrosine--tRNA ligase [Candidatus Protochlamydia phocaeensis] diamond 609 84 0.990476190476191 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia phocaeensis
33148050 33148050 PRJEB14175_P_NODE_192792_length_234_cov_1.479769_g190525_i0 PRJEB14175 192792 234 1.479769 3.46265946 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 50.8 4.88e-5   NR HEY2810533.1 2047756 g190525 i0 36.4 0.846153846153846 66 42 84.6 0 210 13 975 1040 HEY2810533.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 198 50.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
33161323 33161323 PRJEB14175_P_NODE_158400_length_267_cov_1.242718_g156133_i0 PRJEB14175 158400 267 1.242718 3.31805706 Bacteria 2 Bacteria Bacteria 56.6 6.06e-7   NR OGN65457.1 1797605 g156133 i0 43.8 9.23595505617978 80 41 88.8 2 259 23 197 273 OGN65457.1 MAG: transposase [Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_9] diamond 2466 57 0.992982456140351 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_9
33164450 33164450 PRJEB14175_P_NODE_133056_length_299_cov_5.495798_g130789_i0 PRJEB14175 133056 299 5.495798 16.43243602 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 110 6.1e-26   NR HEY5259814.1 2047756 g130789 i0 59.3 1.71571906354515 81 33 81.3 0 276 34 278 358 HEY5259814.1 M3 family metallopeptidase [Rhabdochlamydiaceae bacterium] diamond 513 110 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
33165992 33165992 PRJEB14175_P_NODE_57536_length_490_cov_5.193473_g55285_i0 PRJEB14175 57536 490 5.193473 25.4480177 Chlamydiales bacterium 2047757 Bacteria Bacteria 56.2 8.55e-6   NR HXF28773.1 2047757 g55285 i0 41.4 1.21836734693878 70 35 39.2 1 488 297 439 508 HXF28773.1 IS200/IS605 family accessory protein TnpB-related protein [Chlamydiales bacterium] diamond 597 56.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;