RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB1404" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB1404 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2261004 2261004 PRJEB1404_S_NODE_762_length_303_cov_287.570896_g742_i0 PRJEB1404 762 303 287.570896 871.33981488 root 1 Root_unresolved Root_unresolved 108 5.94e-19   NTclustered gi|687789777|emb|LK829830.1| 57078 g742 i0 94.286 23.1023102310231 70 4 23 0 3 72 603 534 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 7000 108 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
3536323 3536323 PRJEB1404_S_NODE_383_length_367_cov_628.409639_g363_i0 PRJEB1404 383 367 628.409639 2306.26337513 root 1 Root_unresolved Root_unresolved 108 7.33e-19   NTclustered gi|687789777|emb|LK829830.1| 57078 g363 i0 94.286 19.0735694822888 70 4 19 0 296 365 534 603 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 7000 108 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
15013567 15013567 PRJEB1404_S_NODE_772_length_302_cov_223.269663_g752_i0 PRJEB1404 772 302 223.269663 674.27438226 root 1 Root_unresolved Root_unresolved 108 5.92e-19   NTclustered gi|687789777|emb|LK829830.1| 57078 g752 i0 94.286 23.1788079470199 70 4 23 0 3 72 603 534 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 7000 108 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;