RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB1404", tax_clade = "Opisthokonta" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJEB1404 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2261002 2261002 PRJEB1404_S_NODE_4702_length_151_cov_1.724138_g4682_i0 PRJEB1404 4702 151 1.724138 2.60344838 Pucciniales 5258 Fungi Fungi 52.8 0.012   NTclustered gi|1714236393|ref|NC_044121.1| 181123 g4682 i0 100 0.370860927152318 28 0 19 0 124 151 43867 43840 Austropuccinia psidii isolate MF-1 mitochondrion, complete genome blastn 56 52.8 1 Eukaryota Opisthokonta Fungi Basidiomycota Pucciniomycetes Pucciniales Sphaerophragmiaceae Austropuccinia Austropuccinia psidii
11499120 11499120 PRJEB1404_P_NODE_1650_length_268_cov_1.299578_g1624_i0 PRJEB1404 1650 268 1.299578 3.48286904 Hannaella oryzae 4979 Fungi Fungi 99 3.11e-16   NTclustered gi|388597977|gb|JQ754107.1| 4979 g1624 i0 89.61 49.0037313432836 77 8 29 0 3 79 1 77 Hannaella oryzae strain CMT22 large subunit ribosomal RNA gene, partial sequence blastn 13133 99 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Bulleribasidiaceae Hannaella Hannaella oryzae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;