RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB12982" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB12982 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4813545 4813545 PRJEB12982_P_NODE_21524_length_153_cov_2.913462_g21361_i0 PRJEB12982 21524 153 2.913462 4.45759686 Elardia 2681632 Tubulinea other_Eukaryota 189 9.16e-44   NTclustered gi|304308793|gb|HM853729.1| 497998 g21361 i0 88.889 98.3529411764706 153 17 100 0 1 153 193 41 Arcella hemisphaerica strain red clone act42 actin gene, partial cds blastn 15048 189 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella hemisphaerica
14049198 14049198 PRJEB12982_P_NODE_8552_length_245_cov_1.040816_g8389_i0 PRJEB12982 8552 245 1.040816 2.5499992 Cryptodifflugia oviformis 1165352 Tubulinea other_Eukaryota 398 2.47e-106   NTclustered gi|2517949732|gb|OR125031.1| 1165352 g8389 i0 96.653 56.0081632653061 239 8 98 0 7 245 710 948 Cryptodifflugia oviformis isolate strain_6 small subunit ribosomal RNA gene, partial sequence blastn 13722 398 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia oviformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;