RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJEB12982", tax_phylum = "Negarnaviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 9 ✖

tax_phylum 1

  • Negarnaviricota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJEB12982 · 9 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
985709 985709 PRJEB12982_P_NODE_641_length_1001_cov_19.754202_g546_i0 PRJEB12982 641 1001 19.754202 197.73956202 Alphainfluenzavirus 197911 Viruses Viruses 1836 0   NTclustered gi|2164748429|gb|OL831185.1| 11320 g546 i0 99.8 99.2997002997003 1000 2 99 0 2 1001 5 1004 Influenza A virus (A/India/H1N1-P2/2020(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds blastn 99399 1836 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
6088820 6088820 PRJEB12982_P_NODE_825_length_871_cov_60.521898_g712_i0 PRJEB12982 825 871 60.521898 527.14573158 Alphainfluenzavirus 197911 Viruses Viruses 1605 0   NTclustered gi|324878|gb|M12597.1|FLANSW 382835 g712 i0 100 98.7336394948335 869 0 99 0 1 869 869 1 Influenza A virus (A/WSN/1933(H1N1)) nonstructural protein 1 gene, complete cds blastn 85997 1605 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
9913859 9913859 PRJEB12982_P_NODE_228_length_1548_cov_61.446298_g189_i0 PRJEB12982 228 1548 61.446298 951.18869304 root 1 Root_unresolved Root_unresolved 2846 0   NTclustered gi|2164728774|gb|OL831136.1| 11320 g189 i0 99.935 99.1395348837209 1544 1 99 0 5 1548 1 1544 Influenza A virus (A/India/H1N1p2/2020(H1N1)) segment 5 nucleocapsid protein (NP) gene, complete cds blastn 153468 2848 0.999297752808989 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
12464834 12464834 PRJEB12982_P_NODE_3690_length_398_cov_11.593123_g3527_i0 PRJEB12982 3690 398 11.593123 46.14062954 root 1 Root_unresolved Root_unresolved 462 1.4899999999999998e-125   NTclustered gi|94960382|gb|CY010793.1| 370129 g3527 i0 100 96.2211055276382 250 0 96 0 149 398 1946 2195 Influenza A virus (A/WSN/1933 TS61(H1N1)) segment 3, complete sequence blastn 38296 462 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
13739138 13739138 PRJEB12982_P_NODE_71_length_2209_cov_5.237963_g59_i0 PRJEB12982 71 2209 5.237963 115.70660267 root 1 Root_unresolved Root_unresolved 4052 0   NTclustered gi|2164728769|gb|OL831134.1| 11320 g59 i0 99.819 99.4889090086012 2206 4 99 0 4 2209 1 2206 Influenza A virus (A/India/H1N1p2/2020(H1N1)) segment 3 polymerase PA (PA) and PA-X protein (PA-X) genes, complete cds blastn 219771 4074 0.994599901816397 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
18837497 18837497 PRJEB12982_P_NODE_315_length_1371_cov_15.780635_g258_i0 PRJEB12982 315 1371 15.780635 216.35250585 root 1 Root_unresolved Root_unresolved 2483 0   NTclustered gi|2164728776|gb|OL831137.1| 11320 g258 i0 99.559 96.054704595186 1362 6 99 0 1 1362 1363 2 Influenza A virus (A/India/H1N1p2/2020(H1N1)) segment 6 neuraminidase (NA) gene, complete cds blastn 131691 2494 0.995589414595028 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
22662615 22662615 PRJEB12982_P_NODE_158_length_1758_cov_30.121123_g127_i0 PRJEB12982 158 1758 30.121123 529.52934234 Alphainfluenzavirus 197911 Viruses Viruses 3197 0   NTclustered gi|94960370|gb|CY010788.1| 370129 g127 i0 99.828 98.773606370876 1741 2 99 1 1 1741 1740 1 Influenza A virus (A/WSN/1933 TS61(H1N1)) segment 4, complete sequence blastn 173644 3208 0.996571072319202 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
22662643 22662643 PRJEB12982_P_NODE_58_length_2325_cov_6.749121_g48_i0 PRJEB12982 58 2325 6.749121 156.91706325 root 1 Root_unresolved Root_unresolved 4266 0   NTclustered gi|2164748415|gb|OL831179.1| 11320 g48 i0 99.828 99.4756989247312 2322 4 99 0 4 2325 1 2322 Influenza A virus (A/India/H1N1-P2/2020(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds blastn 231281 4285 0.995565927654609 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
25211772 25211772 PRJEB12982_P_NODE_60_length_2316_cov_8.075871_g50_i0 PRJEB12982 60 2316 8.075871 187.03717236 root 1 Root_unresolved Root_unresolved 4259 0   NTclustered gi|2164728766|gb|OL831133.1| 11320 g50 i0 99.87 99.4365284974093 2315 3 99 0 1 2315 2315 1 Influenza A virus (A/India/H1N1p2/2020(H1N1)) segment 2 polymerase PB1 (PB1) and PB1-F2 protein (PB1-F2) genes, complete cds blastn 230295 4277 0.995791442599953 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;