RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJEB12982" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 11 ✖

tax_clade 1

bioproject 1

  • PRJEB12982 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2570782 2570782 PRJEB12982_P_NODE_15323_length_177_cov_1.117188_g15160_i0 PRJEB12982 15323 177 1.117188 1.97742276 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 56.5 0.001   NTclustered gi|470375882|ref|XM_004333185.1| 1257118 g15160 i0 100 0.988700564971751 30 0 17 0 146 175 231 202 Acanthamoeba castellanii str. Neff ubiquitin domain containing protein (ACA1_389410), partial mRNA blastn 175 56.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5123377 5123377 PRJEB12982_P_NODE_20045_length_162_cov_2.247788_g19882_i0 PRJEB12982 20045 162 2.247788 3.64141656 Ripella sp. 1973050 Discosea other_Eukaryota 272 9.51e-69   NTclustered gi|2666517888|gb|PP258999.1| 1973050 g19882 i0 96.933 97.1604938271605 163 4 100 1 1 162 244 406 Ripella sp. strain CHIESE83/1 small subunit ribosomal RNA gene, partial sequence blastn 15740 272 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp.
9913846 9913846 PRJEB12982_P_NODE_1488_length_639_cov_1.967797_g1343_i0 PRJEB12982 1488 639 1.967797 12.57422283 Acanthamoeba 5754 Discosea other_Eukaryota 244 9.76e-60   NTclustered gi|28194618|gb|AF479562.1| 29195 g1343 i0 76.724 44.4100156494523 464 92 72 15 1 457 887 433 Acanthamoeba griffini strain S7 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 28378 244 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba griffini
11498906 11498906 PRJEB12982_P_NODE_14030_length_186_cov_1.153285_g13867_i0 PRJEB12982 14030 186 1.153285 2.1451101 Cochliopodium minus 313997 Discosea other_Eukaryota 237 4.09e-58   NTclustered gi|330902895|gb|JF298272.1| 313997 g13867 i0 91.813 93.0268817204301 171 12 91 2 4 173 935 1104 Cochliopodium minus clone 5207 actin gene, partial cds blastn 17303 237 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
12774566 12774566 PRJEB12982_P_NODE_1991_length_553_cov_2.670635_g1832_i0 PRJEB12982 1991 553 2.670635 14.76861155 Ripella sp. GP2 1217115 Discosea other_Eukaryota 874 0   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g1832 i0 95.332 99.5840867992767 557 15 100 7 1 553 12 561 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 55070 874 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
16288393 16288393 PRJEB12982_P_NODE_4353_length_362_cov_1.690096_g4190_i0 PRJEB12982 4353 362 1.690096 6.11814752 Ripella 1217112 Discosea other_Eukaryota 564 3.57e-156   NTclustered gi|399764203|gb|JQ271714.1| 1217114 g4190 i0 96.765 94.2845303867403 340 8 94 2 15 353 1591 1254 Ripella sp. DP13 18S ribosomal RNA gene, partial sequence blastn 34131 568 0.992957746478873 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. DP13
19146597 19146597 PRJEB12982_P_NODE_9576_length_229_cov_1.133333_g9413_i0 PRJEB12982 9576 229 1.133333 2.59533257 Cochliopodium minus 313997 Discosea other_Eukaryota 322 1.41e-83   NTclustered gi|330902862|gb|JF298257.1| 313997 g9413 i0 92.544 8.87772925764192 228 11 99 6 3 229 370 148 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 2033 322 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
27665091 27665091 PRJEB12982_P_NODE_18864_length_164_cov_0.886957_g18701_i0 PRJEB12982 18864 164 0.886957 1.45460948 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 77.4 7.58e-15   NR XP_004353652.1 1257118 g18701 i0 74.5 0.932926829268293 51 13 93.3 0 6 158 327 377 XP_004353652.1 transcriptional regulator, Sir2 family protein [Acanthamoeba castellanii str. Neff] diamond 153 77.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29938376 29938376 PRJEB12982_P_NODE_21071_length_161_cov_0.910714_g20908_i0 PRJEB12982 21071 161 0.910714 1.46624954 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.4 2.85e-4   NR XP_004341550.1 1257118 g20908 i0 62.5 1.2111801242236 32 12 59.6 0 1 96 547 578 XP_004341550.1 methylenetetrahydrofolate reductase [Acanthamoeba castellanii str. Neff] diamond 195 47.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32782633 32782633 PRJEB12982_P_NODE_13360_length_191_cov_1.436620_g13197_i0 PRJEB12982 13360 191 1.43662 2.7439442 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 48.1 2.31e-4   NR XP_004353486.1 1257118 g13197 i0 47.2 0.832460732984293 53 27 83.2 1 159 1 99 150 XP_004353486.1 amine oxidase, flavincontaining superfamily protein [Acanthamoeba castellanii str. Neff] diamond 159 48.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32845769 32845769 PRJEB12982_P_NODE_17100_length_167_cov_0.864407_g16937_i0 PRJEB12982 17100 167 0.864407 1.44355969 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 85.9 6.68e-19   NR XP_004348701.1 1257118 g16937 i0 67.3 2.96407185628743 55 18 98.8 0 3 167 131 185 XP_004348701.1 Ras family protein [Acanthamoeba castellanii str. Neff] diamond 495 85.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;