RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJEB12982", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 5 ✖

tax_kingdom 1

  • Pseudomonadati · 5 ✖

bioproject 1

  • PRJEB12982 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17563536 17563536 PRJEB12982_P_NODE_18874_length_164_cov_0.886957_g18711_i0 PRJEB12982 18874 164 0.886957 1.45460948 Myxococcus 32 Bacteria Bacteria 52.8 0.014   NTclustered gi|2869653495|gb|CP175551.1| 33 g18711 i0 100 0.51219512195122 28 0 17 0 4 31 975674 975647 Myxococcus fulvus strain KYC1117 chromosome, complete genome blastn 84 52.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus
18837514 18837514 PRJEB12982_P_NODE_9795_length_226_cov_1.429379_g9632_i0 PRJEB12982 9795 226 1.429379 3.23039654 Archangiaceae 39 Bacteria Bacteria 161 3.2e-35   NTclustered gi|2579656172|gb|CP043491.1| 43 g9632 i0 80.365 58.1991150442478 219 37 96 5 2 217 2700839 2701054 Cystobacter fuscus strain Cbf 10 chromosome, complete genome blastn 13153 161 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
28163822 28163822 PRJEB12982_P_NODE_20285_length_162_cov_0.902655_g20122_i0 PRJEB12982 20285 162 0.902655 1.4623011 Bacteria 2 Bacteria Bacteria 88.6 7.18e-19   NR MEO7734384.1 2212474 g20122 i0 83.3 3.96296296296296 54 9 100 0 1 162 15 68 MEO7734384.1 DHA2 family efflux MFS transporter permease subunit [Kofleriaceae bacterium] diamond 642 88.6 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
29274998 29274998 PRJEB12982_P_NODE_14489_length_182_cov_1.917293_g14326_i0 PRJEB12982 14489 182 1.917293 3.48947326 Hyalangium sp. 2028555 Bacteria Bacteria 50.4 2.45e-5   NR HVG62187.1 2028555 g14326 i0 47.6 1.03846153846154 63 24 89 1 3 164 23 85 HVG62187.1 SDR family oxidoreductase [Hyalangium sp.] diamond 189 50.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Hyalangium Hyalangium sp.
32656538 32656538 PRJEB12982_P_NODE_20700_length_162_cov_0.876106_g20537_i0 PRJEB12982 20700 162 0.876106 1.41929172 Polyangia bacterium 3058050 Bacteria Bacteria 44.3 0.00349   NR HVZ71650.1 3058050 g20537 i0 42.3 0.962962962962963 52 27 96.3 1 5 160 255 303 HVZ71650.1 tetratricopeptide repeat protein [Polyangia bacterium] diamond 156 44.3 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;