RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB12982", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJEB12982 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19146425 19146425 PRJEB12982_P_NODE_16856_length_167_cov_0.864407_g16693_i0 PRJEB12982 16856 167 0.864407 1.44355969 Candidatus Roseilinea sp. 2838777 Bacteria Bacteria 189 1.0199999999999999e-43   NTclustered gi|2314722916|dbj|AP024676.1| 2838777 g16693 i0 94.309 47.3473053892216 123 7 74 0 3 125 3496023 3496145 MAG: Candidatus Roseilinea sp. KatS3mg053 DNA, complete genome blastn 7907 189 1 Bacteria Candidatus Thermofonsia Clade 3 Bacillati Chloroflexota Candidatus Thermofontia     Candidatus Roseilinea Candidatus Roseilinea sp.
20421476 20421476 PRJEB12982_P_NODE_10057_length_223_cov_0.879310_g9894_i0 PRJEB12982 10057 223 0.87931 1.9608613 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 206 1.44e-48   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g9894 i0 89.937 84.6367713004484 159 16 71 0 65 223 273462 273620 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 18874 206 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
30127559 30127559 PRJEB12982_P_NODE_20912_length_161_cov_0.910714_g20749_i0 PRJEB12982 20912 161 0.910714 1.46624954 Phototrophicales bacterium 2364211 Bacteria Bacteria 68.2 3.1e-13   NR PJF33856.1 2364211 g20749 i0 49.1 0.987577639751553 53 27 98.8 0 160 2 9 61 PJF33856.1 MAG: hypothetical protein CUN57_01060 [Phototrophicales bacterium] diamond 159 68.2 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales     Phototrophicales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;