contig_metadata
10 rows where bioproject = "PRJEB12982", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18837507 | 18837507 | PRJEB12982_P_NODE_6695_length_282_cov_1.751073_g6532_i0 | PRJEB12982 | 6695 | 282 | 1.751073 | 4.93802586 | Caenorhabditis | 6237 | Nematoda | Nematoda | 294 | 3.91e-75 | NTclustered | gi|268559799|ref|XM_002646027.1| | 6238 | g6532 | i0 | 87.549 | 92.9397163120567 | 257 | 28 | 90 | 4 | 23 | 277 | 1307 | 1053 | Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA | blastn | 26209 | 294 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Rhabditidae | Caenorhabditis | Caenorhabditis briggsae | |
| 20421625 | 20421625 | PRJEB12982_P_NODE_18937_length_164_cov_0.886957_g18774_i0 | PRJEB12982 | 18937 | 164 | 0.886957 | 1.45460948 | Strongyloides ratti | 34506 | Nematoda | Nematoda | 135 | 1.32e-27 | NTclustered | gi|1376138189|ref|XM_024649290.1| | 34506 | g18774 | i0 | 82.317 | 1 | 164 | 21 | 98 | 6 | 1 | 160 | 1311 | 1470 | Strongyloides ratti Probable glutamine--tRNA ligase (SRAE_1000223700), partial mRNA | blastn | 164 | 135 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Strongyloididae | Strongyloides | Strongyloides ratti | |
| 22662629 | 22662629 | PRJEB12982_P_NODE_19098_length_164_cov_0.886957_g18935_i0 | PRJEB12982 | 19098 | 164 | 0.886957 | 1.45460948 | Eukaryota | 2759 | unresolved_Eukaryota | other_Eukaryota | 67.6 | 4.89e-7 | NTclustered | gi|946978308|gb|KP986799.1| | 1748612 | g18935 | i0 | 87.931 | 1.71341463414634 | 58 | 6 | 35 | 1 | 1 | 57 | 373 | 430 | Desmoscolecidae sp. 683_5-1500_X 28S ribosomal RNA gene, partial sequence | blastn | 281 | 67.6 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Desmoscolecida | Desmoscolecidae | Desmoscolecidae sp. 683_5-1500_X | ||
| 27437793 | 27437793 | PRJEB12982_P_NODE_11123_length_211_cov_1.259259_g10960_i0 | PRJEB12982 | 11123 | 211 | 1.259259 | 2.65703649 | Metazoa | 33208 | Nematoda | Nematoda | 67.8 | 1.02e-12 | NR | CDQ07605.1 | 6279 | g10960 | i0 | 63.2 | 19.478672985782 | 57 | 21 | 81 | 0 | 174 | 4 | 27 | 83 | CDQ07605.1 Bm11937 [Brugia malayi] | diamond | 4110 | 67.8 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Onchocercidae | Brugia | Brugia malayi | |
| 27532243 | 27532243 | PRJEB12982_P_NODE_11643_length_206_cov_1.617834_g11480_i0 | PRJEB12982 | 11643 | 206 | 1.617834 | 3.33273804 | Rhabditida | 6236 | Nematoda | Nematoda | 65.1 | 3.78e-11 | NR | XP_042931666.1 | 6279 | g11480 | i0 | 55.1 | 7.82038834951456 | 49 | 22 | 71.4 | 0 | 155 | 9 | 42 | 90 | XP_042931666.1 60S ribosomal protein L23a, putative [Brugia malayi] | diamond | 1611 | 65.5 | 0.993893129770992 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Onchocercidae | Brugia | Brugia malayi | |
| 29710475 | 29710475 | PRJEB12982_P_NODE_4870_length_340_cov_1.092784_g4707_i0 | PRJEB12982 | 4870 | 340 | 1.092784 | 3.7154656 | Eukaryota | 2759 | unresolved_Eukaryota | other_Eukaryota | 155 | 5.689999999999999e-46 | NR | VDN82626.1 | 6280 | g4707 | i0 | 77 | 110.752941176471 | 100 | 23 | 88.2 | 0 | 1 | 300 | 65 | 164 | VDN82626.1 unnamed protein product [Brugia pahangi] | diamond | 37656 | 156 | 0.993589743589744 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Onchocercidae | Brugia | Brugia pahangi | |
| 29811786 | 29811786 | PRJEB12982_P_NODE_19131_length_164_cov_0.886957_g18968_i0 | PRJEB12982 | 19131 | 164 | 0.886957 | 1.45460948 | Caenorhabditis angaria | 860376 | Nematoda | Nematoda | 46.2 | 7.69e-4 | NR | CAI5446104.1 | 860376 | g18968 | i0 | 75.9 | 1.07926829268293 | 29 | 7 | 53 | 0 | 3 | 89 | 1296 | 1324 | CAI5446104.1 unnamed protein product [Caenorhabditis angaria] | diamond | 177 | 46.2 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Rhabditidae | Caenorhabditis | Caenorhabditis angaria | |
| 30816585 | 30816585 | PRJEB12982_P_NODE_5614_length_314_cov_1.316981_g5451_i0 | PRJEB12982 | 5614 | 314 | 1.316981 | 4.13532034 | root | 1 | Root_unresolved | Root_unresolved | 110 | 1.93e-25 | NR | KAI1716765.1 | 166010 | g5451 | i0 | 48.5 | 7.92993630573248 | 103 | 53 | 98.4 | 0 | 5 | 313 | 601 | 703 | KAI1716765.1 elongation factor tu GTP binding domain-containing protein [Ditylenchus destructor] | diamond | 2490 | 110 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Anguinidae | Ditylenchus | Ditylenchus destructor | |
| 31258992 | 31258992 | PRJEB12982_P_NODE_5015_length_335_cov_1.066434_g4852_i0 | PRJEB12982 | 5015 | 335 | 1.066434 | 3.5725539 | Metazoa | 33208 | Nematoda | Nematoda | 158 | 2.6399999999999992e-43 | NR | NP_001022078.1 | 6239 | g4852 | i0 | 66.7 | 8.94626865671642 | 111 | 37 | 99.4 | 0 | 2 | 334 | 322 | 432 | NP_001022078.1 putative methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial [Caenorhabditis elegans] | diamond | 2997 | 158 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Rhabditidae | Caenorhabditis | Caenorhabditis elegans | |
| 32492924 | 32492924 | PRJEB12982_P_NODE_20319_length_162_cov_0.902655_g20156_i0 | PRJEB12982 | 20319 | 162 | 0.902655 | 1.4623011 | Opisthokonta | 33154 | Nematoda | Nematoda | 79.7 | 1.12e-15 | NR | XP_024506970.1 | 34506 | g20156 | i0 | 71.2 | 29.962962962963 | 52 | 15 | 96.3 | 0 | 161 | 6 | 277 | 328 | XP_024506970.1 Glycine--tRNA ligase [Strongyloides ratti] | diamond | 4854 | 79.7 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Strongyloididae | Strongyloides | Strongyloides ratti |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;