RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJEB12982" and tax_clade = "Cyanobacteriota/Melainabacteria group"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 6 ✖

bioproject 1

  • PRJEB12982 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8948019 8948019 PRJEB12982_P_NODE_5028_length_334_cov_1.726316_g4865_i0 PRJEB12982 5028 334 1.726316 5.76589544 Candidatus Obscuribacterales bacterium 2364082 Bacteria Bacteria 187 2.94e-58   NR MBX9724270.1 2364082 g4865 i0 96.7 0.817365269461078 91 3 81.7 0 333 61 80 170 MBX9724270.1 50S ribosomal protein L15e [Candidatus Obscuribacterales bacterium] diamond 273 187 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Candidatus Melainabacteria   Candidatus Obscuribacterales     Candidatus Obscuribacterales bacterium
13739098 13739098 PRJEB12982_P_NODE_13531_length_190_cov_1.092199_g13368_i0 PRJEB12982 13531 190 1.092199 2.0751781 Oscillatoriales 1150 Bacteria Bacteria 351 1.4399999999999997e-92   NTclustered gi|1026287096|gb|KU218870.1| 1211 g13368 i0 100 103 190 0 100 0 1 190 190 1 Uncultured cyanobacterium clone MnSV_DE08834E10 16S ribosomal RNA gene, partial sequence blastn 19570 351 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         uncultured cyanobacterium
16288398 16288398 PRJEB12982_P_NODE_5793_length_308_cov_2.073359_g5630_i0 PRJEB12982 5793 308 2.073359 6.38594572 Thermosynechococcus 146785 Bacteria Bacteria 203 1.6899999999999998e-60   NR WP_231833792.1 146786 g5630 i0 99 3.97402597402597 102 1 99.4 0 307 2 39 140 WP_231833792.1 group II intron reverse transcriptase/maturase [Thermosynechococcus vestitus] diamond 1224 204 0.995098039215686 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Acaryochloridales Thermosynechococcaceae Thermosynechococcus Thermosynechococcus vestitus
20421584 20421584 PRJEB12982_P_NODE_16857_length_167_cov_0.864407_g16694_i0 PRJEB12982 16857 167 0.864407 1.44355969 Synechococcus sp. CBW1107 2789857 Bacteria Bacteria 60.2 8.37e-5   NTclustered gi|2638498304|emb|OY986430.1| 2789857 g16694 i0 97.143 0.209580838323353 35 1 21 0 101 135 2168481 2168447 Synechococcus sp. CBW1107 isolate KAC_114 genome assembly, chromosome: 1 blastn 35 60.2 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. CBW1107
28075253 28075253 PRJEB12982_P_NODE_11425_length_208_cov_1.509434_g11262_i0 PRJEB12982 11425 208 1.509434 3.13962272 Thermosynechococcus vestitus BP-1 197221 Bacteria Bacteria 76.3 1.63e-15   NR BAC08550.1 197221 g11262 i0 92.7 1.77403846153846 41 3 59.1 0 83 205 1 41 BAC08550.1 reverse transcriptase [Thermosynechococcus vestitus BP-1] diamond 369 76.3 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Acaryochloridales Thermosynechococcaceae Thermosynechococcus Thermosynechococcus vestitus
29653687 29653687 PRJEB12982_P_NODE_7070_length_273_cov_1.982143_g6907_i0 PRJEB12982 7070 273 1.982143 5.41125039 Thermosynechococcus vestitus 146786 Bacteria Bacteria 190 1.0299999999999995e-55   NR WP_231833792.1 146786 g6907 i0 98.9 0.989010989010989 90 1 98.9 0 271 2 150 239 WP_231833792.1 group II intron reverse transcriptase/maturase [Thermosynechococcus vestitus] diamond 270 190 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Acaryochloridales Thermosynechococcaceae Thermosynechococcus Thermosynechococcus vestitus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;