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contig_metadata

23 rows where bioproject = "PRJEB12982" and tax_clade = "Amoebozoa"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 23 ✖

bioproject 1

  • PRJEB12982 · 23 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2570782 2570782 PRJEB12982_P_NODE_15323_length_177_cov_1.117188_g15160_i0 PRJEB12982 15323 177 1.117188 1.97742276 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 56.5 0.001   NTclustered gi|470375882|ref|XM_004333185.1| 1257118 g15160 i0 100 0.988700564971751 30 0 17 0 146 175 231 202 Acanthamoeba castellanii str. Neff ubiquitin domain containing protein (ACA1_389410), partial mRNA blastn 175 56.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4813545 4813545 PRJEB12982_P_NODE_21524_length_153_cov_2.913462_g21361_i0 PRJEB12982 21524 153 2.913462 4.45759686 Elardia 2681632 Tubulinea other_Eukaryota 189 9.16e-44   NTclustered gi|304308793|gb|HM853729.1| 497998 g21361 i0 88.889 98.3529411764706 153 17 100 0 1 153 193 41 Arcella hemisphaerica strain red clone act42 actin gene, partial cds blastn 15048 189 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella hemisphaerica
5123377 5123377 PRJEB12982_P_NODE_20045_length_162_cov_2.247788_g19882_i0 PRJEB12982 20045 162 2.247788 3.64141656 Ripella sp. 1973050 Discosea other_Eukaryota 272 9.51e-69   NTclustered gi|2666517888|gb|PP258999.1| 1973050 g19882 i0 96.933 97.1604938271605 163 4 100 1 1 162 244 406 Ripella sp. strain CHIESE83/1 small subunit ribosomal RNA gene, partial sequence blastn 15740 272 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp.
5123408 5123408 PRJEB12982_P_NODE_3605_length_404_cov_1.292958_g3442_i0 PRJEB12982 3605 404 1.292958 5.22355032 Heterostelium album 2086695 Evosea other_Eukaryota 272 2.73e-68   NTclustered gi|1160557950|ref|XM_020575808.1| 670386 g3442 i0 85.441 128.170792079208 261 38 65 0 2 262 1072 1332 Polysphondylium pallidum PN500 ubiquitin (ubqI), partial mRNA blastn 51781 272 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
6399121 6399121 PRJEB12982_P_NODE_19986_length_163_cov_0.894737_g19823_i0 PRJEB12982 19986 163 0.894737 1.45842131 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 66.2 4.48e-12   NR KAH3763125.1 1580589 g19823 i0 72.5 0.736196319018405 40 11 73.6 0 44 163 6 45 KAH3763125.1 60S acidic ribosomal protein P1 [Pelomyxa schiedti] diamond 120 66.2 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
9913846 9913846 PRJEB12982_P_NODE_1488_length_639_cov_1.967797_g1343_i0 PRJEB12982 1488 639 1.967797 12.57422283 Acanthamoeba 5754 Discosea other_Eukaryota 244 9.76e-60   NTclustered gi|28194618|gb|AF479562.1| 29195 g1343 i0 76.724 44.4100156494523 464 92 72 15 1 457 887 433 Acanthamoeba griffini strain S7 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 28378 244 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba griffini
11498906 11498906 PRJEB12982_P_NODE_14030_length_186_cov_1.153285_g13867_i0 PRJEB12982 14030 186 1.153285 2.1451101 Cochliopodium minus 313997 Discosea other_Eukaryota 237 4.09e-58   NTclustered gi|330902895|gb|JF298272.1| 313997 g13867 i0 91.813 93.0268817204301 171 12 91 2 4 173 935 1104 Cochliopodium minus clone 5207 actin gene, partial cds blastn 17303 237 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
12774566 12774566 PRJEB12982_P_NODE_1991_length_553_cov_2.670635_g1832_i0 PRJEB12982 1991 553 2.670635 14.76861155 Ripella sp. GP2 1217115 Discosea other_Eukaryota 874 0   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g1832 i0 95.332 99.5840867992767 557 15 100 7 1 553 12 561 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 55070 874 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
14049198 14049198 PRJEB12982_P_NODE_8552_length_245_cov_1.040816_g8389_i0 PRJEB12982 8552 245 1.040816 2.5499992 Cryptodifflugia oviformis 1165352 Tubulinea other_Eukaryota 398 2.47e-106   NTclustered gi|2517949732|gb|OR125031.1| 1165352 g8389 i0 96.653 56.0081632653061 239 8 98 0 7 245 710 948 Cryptodifflugia oviformis isolate strain_6 small subunit ribosomal RNA gene, partial sequence blastn 13722 398 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia oviformis
16288393 16288393 PRJEB12982_P_NODE_4353_length_362_cov_1.690096_g4190_i0 PRJEB12982 4353 362 1.690096 6.11814752 Ripella 1217112 Discosea other_Eukaryota 564 3.57e-156   NTclustered gi|399764203|gb|JQ271714.1| 1217114 g4190 i0 96.765 94.2845303867403 340 8 94 2 15 353 1591 1254 Ripella sp. DP13 18S ribosomal RNA gene, partial sequence blastn 34131 568 0.992957746478873 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. DP13
19146597 19146597 PRJEB12982_P_NODE_9576_length_229_cov_1.133333_g9413_i0 PRJEB12982 9576 229 1.133333 2.59533257 Cochliopodium minus 313997 Discosea other_Eukaryota 322 1.41e-83   NTclustered gi|330902862|gb|JF298257.1| 313997 g9413 i0 92.544 8.87772925764192 228 11 99 6 3 229 370 148 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 2033 322 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
21697582 21697582 PRJEB12982_P_NODE_12758_length_196_cov_1.387755_g12595_i0 PRJEB12982 12758 196 1.387755 2.7199998 Telaepolella tubasferens 1346289 Evosea other_Eukaryota 246 7.25e-61   NTclustered gi|167859711|gb|EU273435.1| 1346289 g12595 i0 89.286 96.5663265306122 196 21 100 0 1 196 357 162 Telaepolella tubasferens clone 1 actin gene, partial cds blastn 18927 246 1 Eukaryota Amoebozoa   Evosea Variosea   Flamellidae Telaepolella Telaepolella tubasferens
26589552 26589552 PRJEB12982_P_NODE_12441_length_199_cov_1.000000_g12278_i0 PRJEB12982 12441 199 1 1.99 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 60.5 1.18e-8   NR PRP89338.1 1890364 g12278 i0 60.4 0.723618090452261 48 19 72.4 0 25 168 47 94 PRP89338.1 cobalamin synthesis protein P47K [Planoprotostelium fungivorum] diamond 144 60.5 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
27665091 27665091 PRJEB12982_P_NODE_18864_length_164_cov_0.886957_g18701_i0 PRJEB12982 18864 164 0.886957 1.45460948 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 77.4 7.58e-15   NR XP_004353652.1 1257118 g18701 i0 74.5 0.932926829268293 51 13 93.3 0 6 158 327 377 XP_004353652.1 transcriptional regulator, Sir2 family protein [Acanthamoeba castellanii str. Neff] diamond 153 77.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27791303 27791303 PRJEB12982_P_NODE_10264_length_220_cov_1.192982_g10101_i0 PRJEB12982 10264 220 1.192982 2.6245604 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 69.7 4.67e-12   NR PRP89404.1 1890364 g10101 i0 54.7 1.8 64 23 87.3 1 218 27 226 283 PRP89404.1 spermidine synthase [Planoprotostelium fungivorum] diamond 396 69.7 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
28170085 28170085 PRJEB12982_P_NODE_19646_length_163_cov_0.894737_g19483_i0 PRJEB12982 19646 163 0.894737 1.45842131 Polysphondylium violaceum 133409 Evosea other_Eukaryota 70.1 1.53e-12   NR KAF2070078.1 133409 g19483 i0 61.1 1.96932515337423 54 21 99.4 0 2 163 75 128 KAF2070078.1 hypothetical protein CYY_008604 [Polysphondylium violaceum] diamond 321 70.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
29938376 29938376 PRJEB12982_P_NODE_21071_length_161_cov_0.910714_g20908_i0 PRJEB12982 21071 161 0.910714 1.46624954 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.4 2.85e-4   NR XP_004341550.1 1257118 g20908 i0 62.5 1.2111801242236 32 12 59.6 0 1 96 547 578 XP_004341550.1 methylenetetrahydrofolate reductase [Acanthamoeba castellanii str. Neff] diamond 195 47.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30349558 30349558 PRJEB12982_P_NODE_15432_length_176_cov_1.204724_g15269_i0 PRJEB12982 15432 176 1.204724 2.12031424 Physarum polycephalum 5791 Evosea other_Eukaryota 59.7 1.61e-9   NR P18322.3 5791 g15269 i0 74.3 0.596590909090909 35 9 59.7 0 176 72 91 125 P18322.3 RecName: Full=Profilin-P [Physarum polycephalum] diamond 105 59.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
31986367 31986367 PRJEB12982_P_NODE_20438_length_162_cov_0.902655_g20275_i0 PRJEB12982 20438 162 0.902655 1.4623011 Dictyostelium 5782 Evosea other_Eukaryota 50.4 2.24e-5   NR XP_003290573.1 5786 g20275 i0 49.1 2.09259259259259 57 22 98.1 3 161 3 170 223 XP_003290573.1 uncharacterized protein DICPUDRAFT_155103 [Dictyostelium purpureum] diamond 339 50.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
32119564 32119564 PRJEB12982_P_NODE_18158_length_165_cov_0.879310_g17995_i0 PRJEB12982 18158 165 0.87931 1.4508615 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 60.8 5.15e-9   NR KAH3758651.1 1580589 g17995 i0 50 0.981818181818182 54 26 98.2 1 163 2 184 236 KAH3758651.1 IBR domain protein [Pelomyxa schiedti] diamond 162 60.8 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
32562667 32562667 PRJEB12982_P_NODE_17179_length_167_cov_0.864407_g17016_i0 PRJEB12982 17179 167 0.864407 1.44355969 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 61.2 3.91e-9   NR XP_643747.1 352472 g17016 i0 60.7 1.9940119760479 56 16 98.8 2 1 165 256 306 XP_643747.1 hypothetical protein DDB_G0275107 [Dictyostelium discoideum AX4] diamond 333 61.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
32782633 32782633 PRJEB12982_P_NODE_13360_length_191_cov_1.436620_g13197_i0 PRJEB12982 13360 191 1.43662 2.7439442 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 48.1 2.31e-4   NR XP_004353486.1 1257118 g13197 i0 47.2 0.832460732984293 53 27 83.2 1 159 1 99 150 XP_004353486.1 amine oxidase, flavincontaining superfamily protein [Acanthamoeba castellanii str. Neff] diamond 159 48.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32845769 32845769 PRJEB12982_P_NODE_17100_length_167_cov_0.864407_g16937_i0 PRJEB12982 17100 167 0.864407 1.44355969 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 85.9 6.68e-19   NR XP_004348701.1 1257118 g16937 i0 67.3 2.96407185628743 55 18 98.8 0 3 167 131 185 XP_004348701.1 Ras family protein [Acanthamoeba castellanii str. Neff] diamond 495 85.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;