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contig_metadata

28 rows where bioproject = "PRJEB12366" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 28 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12366 · 28 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20767 20767 PRJEB12366_P_NODE_18901_length_157_cov_1.967213_g18711_i0 PRJEB12366 18901 157 1.967213 3.08852441 Metazoa 33208 Chordata Chordata 105 7.55e-25   NR XP_023378286.1 132908 g18711 i0 92 6.72611464968153 50 4 95.5 0 6 155 442 491 XP_023378286.1 F-box/WD repeat-containing protein 1A isoform X9 [Pteropus vampyrus] diamond 1056 106 0.990566037735849 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Pteropus Pteropus vampyrus
985657 985657 PRJEB12366_P_NODE_19141_length_156_cov_1.380165_g18951_i0 PRJEB12366 19141 156 1.380165 2.1530574 Lampetra 13103 Chordata Chordata 60.2 7.68e-5   NTclustered gi|2805735382|emb|OZ078432.1| 7748 g18951 i0 94.737 8.57692307692308 38 2 24 0 33 70 11846162 11846199 Lampetra fluviatilis genome assembly, chromosome: 29 blastn 1338 60.2 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
1294968 1294968 PRJEB12366_P_NODE_14702_length_186_cov_2.543046_g14512_i0 PRJEB12366 14702 186 2.543046 4.73006556 Moschus berezovskii 68408 Chordata Chordata 148 1.97e-31   NTclustered gi|2492370661|ref|XM_055400925.1| 68408 g14512 i0 82.081 18.7903225806452 173 31 93 0 14 186 876 704 PREDICTED: Moschus berezovskii protein phosphatase 1 catalytic subunit beta (PPP1CB), transcript variant X1, mRNA blastn 3495 148 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Moschidae Moschus Moschus berezovskii
3536249 3536249 PRJEB12366_P_NODE_13763_length_194_cov_1.484277_g13573_i0 PRJEB12366 13763 194 1.484277 2.87949738 Mustelidae 9655 Chordata Chordata 135 1.6200000000000003e-27   NTclustered gi|2181383109|ref|XM_046014930.1| 9662 g13573 i0 86.4 64.4175257731959 125 16 64 1 69 192 601 477 PREDICTED: Meles meles RAB6A, member RAS oncogene family (RAB6A), transcript variant X1, mRNA blastn 12497 135 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Meles Meles meles
3536254 3536254 PRJEB12366_P_NODE_6743_length_309_cov_1.642336_g6553_i0 PRJEB12366 6743 309 1.642336 5.07481824 Metazoa 33208 Chordata Chordata 54.7 0.008   NTclustered gi|2813667004|ref|XM_068982296.1| 34865 g6553 i0 100 1.28155339805825 29 0 9 0 67 95 964 936 PREDICTED: Capricornis sumatraensis probable serine/threonine-protein kinase DDB_G0290621 (LOC138087284), mRNA blastn 396 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Capricornis Capricornis sumatraensis
3846964 3846964 PRJEB12366_P_NODE_15744_length_178_cov_1.447552_g15554_i0 PRJEB12366 15744 178 1.447552 2.57664256 Nanorana parkeri 125878 Chordata Chordata 135 1.4500000000000002e-27   NTclustered gi|1072275617|ref|XM_018568243.1| 125878 g15554 i0 80.556 1.01123595505618 180 31 100 3 1 178 2082 2259 PREDICTED: Nanorana parkeri cytoplasmic polyadenylation element-binding protein 2-like (LOC108796733), mRNA blastn 180 135 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dicroglossidae Nanorana Nanorana parkeri
4813497 4813497 PRJEB12366_P_NODE_15944_length_177_cov_1.119718_g15754_i0 PRJEB12366 15944 177 1.119718 1.98190086 Metazoa 33208 Chordata Chordata 130 6.72e-26   NTclustered gi|2181293818|ref|XM_045979493.1| 9662 g15754 i0 81.098 28.9152542372881 164 29 92 2 15 177 497 335 PREDICTED: Meles meles mitogen-activated protein kinase kinase kinase kinase 3 (MAP4K3), transcript variant X10, mRNA blastn 5118 130 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Meles Meles meles
5123161 5123161 PRJEB12366_P_NODE_4545_length_393_cov_1.871508_g4355_i0 PRJEB12366 4545 393 1.871508 7.35502644 Ciona intestinalis 7719 Chordata Chordata 285 3.4e-72   NTclustered gi|1494806301|ref|XM_002121646.5| 7719 g4355 i0 82.716 18.2569974554707 324 52 82 4 71 392 102 423 PREDICTED: Ciona intestinalis ras-related protein Rab-6A (LOC100178081), mRNA blastn 7175 285 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
6088762 6088762 PRJEB12366_P_NODE_2445_length_551_cov_3.410853_g2267_i0 PRJEB12366 2445 551 3.410853 18.79380003 root 1 Root_unresolved Root_unresolved 353 1.33e-92   NTclustered gi|1775667542|ref|NM_001376485.1| 8364 g2267 i0 82.185 70.1034482758621 421 65 75 9 132 547 96 511 Xenopus tropicalis calmodulin 2 (phosphorylase kinase, delta) (calm2), mRNA blastn 38627 355 0.994366197183099 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
8947742 8947742 PRJEB12366_P_NODE_17628_length_165_cov_1.146154_g17438_i0 PRJEB12366 17628 165 1.146154 1.8911541 Metazoa 33208 Chordata Chordata 109 4.49e-26   NR XP_009862085.1 7719 g17438 i0 96.3 28.4727272727273 54 2 98.2 0 163 2 105 158 XP_009862085.1 splicing factor 3B subunit 3 isoform X2 [Ciona intestinalis] diamond 4698 110 0.990909090909091 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
8947794 8947794 PRJEB12366_S_NODE_188_length_327_cov_12.893836_g180_i0 PRJEB12366 188 327 12.893836 42.16284372 Heterocephalus glaber 10181 Chordata Chordata 56.5 0.002   NTclustered gi|1196716653|ref|XR_002393994.1| 10181 g180 i0 100 0.0917431192660551 30 0 9 0 1 30 192 163 PREDICTED: Heterocephalus glaber uncharacterized LOC110348636 (LOC110348636), transcript variant X2, ncRNA blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Bathyergidae Heterocephalus Heterocephalus glaber
10223507 10223507 PRJEB12366_P_NODE_12829_length_203_cov_2.619048_g12639_i0 PRJEB12366 12829 203 2.619048 5.31666744 Erinaceus europaeus 9365 Chordata Chordata 147 7.89e-31   NTclustered gi|2591590486|ref|XM_007536221.3| 9365 g12639 i0 81.977 24.4334975369458 172 31 85 0 31 202 1404 1233 PREDICTED: Erinaceus europaeus ATPase H+ transporting V1 subunit B2 (ATP6V1B2), transcript variant X1, mRNA blastn 4960 147 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Erinaceidae Erinaceus Erinaceus europaeus
13739069 13739069 PRJEB12366_P_NODE_19431_length_154_cov_2.605042_g19241_i0 PRJEB12366 19431 154 2.605042 4.01176468 Metazoa 33208 Chordata Chordata 54.7 0.004   NTclustered gi|299109878|emb|CU481585.13| 9823 g19241 i0 94.286 0.415584415584416 35 2 23 0 107 141 102989 102955 Pig DNA sequence from clone CH242-331J13 on chromosome X, complete sequence blastn 64 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
14048922 14048922 PRJEB12366_P_NODE_7492_length_288_cov_2.233202_g7302_i0 PRJEB12366 7492 288 2.233202 6.43162176 Cairina moschata 8855 Chordata Chordata 52.8 0.027   NTclustered gi|2921976312|gb|CP130421.1| 8855 g7302 i0 100 0.0972222222222222 28 0 10 0 153 180 32959268 32959241 Cairina moschata breed yongchun chromosome 6 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata
16288339 16288339 PRJEB12366_P_NODE_2953_length_502_cov_3.520343_g2768_i0 PRJEB12366 2953 502 3.520343 17.67212186 Lampetra 13103 Chordata Chordata 69.4 4.87e-7   NTclustered gi|2805718863|emb|OZ078457.1| 7748 g2768 i0 78.505 8.29681274900398 107 22 21 1 369 474 5202044 5202150 Lampetra fluviatilis genome assembly, chromosome: 54 blastn 4165 69.4 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
16597549 16597549 PRJEB12366_P_NODE_14434_length_188_cov_2.875817_g14244_i0 PRJEB12366 14434 188 2.875817 5.40653596 Latimeria chalumnae 7897 Chordata Chordata 97.8 1.28e-24   NR XP_014343652.1 7897 g14244 i0 87 81.5585106382979 54 7 86.2 0 26 187 26 79 XP_014343652.1 U6 snRNA-associated Sm-like protein LSm6 isoform X1 [Latimeria chalumnae] diamond 15333 97.8 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
17872380 17872380 PRJEB12366_P_NODE_19475_length_154_cov_1.680672_g19285_i0 PRJEB12366 19475 154 1.680672 2.58823488 Sus scrofa 9823 Chordata Chordata 54.7 0.004   NTclustered gi|1191856256|ref|XM_021083025.1| 9823 g19285 i0 100 18.3051948051948 29 0 19 0 40 68 4960 4988 PREDICTED: Sus scrofa catenin delta 1 (CTNND1), transcript variant X19, mRNA blastn 2819 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
19146306 19146306 PRJEB12366_P_NODE_8016_length_276_cov_2.746888_g7826_i0 PRJEB12366 8016 276 2.746888 7.58141088 Suncus etruscus 109475 Chordata Chordata 178 4.01e-40   NTclustered gi|2279988990|ref|XM_049784796.1| 109475 g7826 i0 80.702 65.8586956521739 228 44 83 0 1 228 152 379 PREDICTED: Suncus etruscus ribosomal protein S27a (RPS27A), mRNA blastn 18177 178 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Suncus Suncus etruscus
20112213 20112213 PRJEB12366_P_NODE_17096_length_168_cov_1.661654_g16906_i0 PRJEB12366 17096 168 1.661654 2.79157872 Squamata 8509 Chordata Chordata 163 6.25e-36   NTclustered gi|1487324448|ref|XM_026669943.1| 8663 g16906 i0 87.324 60.2023809523809 142 18 85 0 11 152 176 35 PREDICTED: Notechis scutatus thioredoxin like 4A (TXNL4A), transcript variant X3, mRNA blastn 10114 163 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Notechis Notechis scutatus
20421420 20421420 PRJEB12366_P_NODE_20197_length_151_cov_1.034483_g20007_i0 PRJEB12366 20197 151 1.034483 1.56206933 Rhineura floridana 261503 Chordata Chordata 122 9.26e-24   NTclustered gi|2636934684|ref|XM_061594302.1| 261503 g20007 i0 82.963 2.66887417218543 135 23 89 0 17 151 264 398 PREDICTED: Rhineura floridana cilia and flagella associated protein 20 (CFAP20), mRNA blastn 403 122 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Rhineuridae Rhineura Rhineura floridana
22662582 22662582 PRJEB12366_P_NODE_13478_length_197_cov_1.228395_g13288_i0 PRJEB12366 13478 197 1.228395 2.41993815 Metazoa 33208 Chordata Chordata 139 1.27e-28   NTclustered gi|2038152078|ref|XM_041585144.1| 8355 g13288 i0 82.692 66.4010152284264 156 27 79 0 9 164 2120 2275 PREDICTED: Xenopus laevis ATPase, Ca++ transporting, plasma membrane 1 L homeolog (atp2b1.L), transcript variant X7, mRNA blastn 13081 139 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
23937997 23937997 PRJEB12366_P_NODE_16419_length_173_cov_1.528986_g16229_i0 PRJEB12366 16419 173 1.528986 2.64514578 Opisthokonta 33154 Chordata Chordata 60.2 8.68e-5   NTclustered gi|2805720935|emb|OZ078489.1| 7750 g16229 i0 100 7.6242774566474 32 0 18 0 31 62 1315697 1315728 Lampetra planeri genome assembly, chromosome: 4 blastn 1319 60.2 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra planeri
24246531 24246531 PRJEB12366_P_NODE_12060_length_212_cov_1.355932_g11870_i0 PRJEB12366 12060 212 1.355932 2.87457584 Marmota marmota 9993 Chordata Chordata 159 1.0699999999999999e-34   NTclustered gi|2262798189|ref|XM_048801516.1| 9994 g11870 i0 80.189 7.08490566037736 212 42 100 0 1 212 486 697 PREDICTED: Marmota marmota marmota elongator acetyltransferase complex subunit 3 (Elp3), transcript variant X1, mRNA blastn 1502 159 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Marmota Marmota marmota
25211723 25211723 PRJEB12366_P_NODE_3300_length_471_cov_1.282110_g3112_i0 PRJEB12366 3300 471 1.28211 6.0387381 Pezoporus 35539 Chordata Chordata 200 1.5499999999999999e-46   NTclustered gi|2518837737|ref|XM_057428338.1| 35540 g3112 i0 80.62 55.0467091295117 258 50 55 0 198 455 438 695 PREDICTED: Pezoporus wallicus calcium/calmodulin dependent protein kinase II delta (CAMK2D), transcript variant X8, mRNA blastn 25927 200 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Psittacidae Pezoporus Pezoporus wallicus
27058318 27058318 PRJEB12366_P_NODE_6982_length_302_cov_1.382022_g6792_i0 PRJEB12366 6982 302 1.382022 4.17370644 Metazoa 33208 Chordata Chordata 43.9 0.031   NR XP_026540820.1 8663 g6792 i0 41.8 1.53973509933775 55 30 52.6 1 41 199 2613 2667 XP_026540820.1 LOW QUALITY PROTEIN: SCO-spondin [Notechis scutatus] diamond 465 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Notechis Notechis scutatus
28858268 28858268 PRJEB12366_P_NODE_19028_length_157_cov_0.983607_g18838_i0 PRJEB12366 19028 157 0.983607 1.54426299 root 1 Root_unresolved Root_unresolved 77.4 6.04e-16   NR KAE8607413.1 8364 g18838 i0 70.2 14.2356687898089 47 14 89.8 0 14 154 38 84 KAE8607413.1 hypothetical protein XENTR_v10011173 [Xenopus tropicalis] diamond 2235 77.8 0.994858611825193 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
29117456 29117456 PRJEB12366_P_NODE_17349_length_166_cov_1.832061_g17159_i0 PRJEB12366 17349 166 1.832061 3.04122126 Cervus elaphus hippelaphus 46360 Chordata Chordata 84.3 2.87e-17   NR OWK15625.1 46360 g17159 i0 75.5 1.78915662650602 53 13 95.8 0 166 8 330 382 OWK15625.1 KLC3 [Cervus elaphus hippelaphus] diamond 297 84.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Cervus Cervus elaphus
32087753 32087753 PRJEB12366_P_NODE_15558_length_179_cov_2.770833_g15368_i0 PRJEB12366 15558 179 2.770833 4.95979107 Neotoma lepida 56216 Chordata Chordata 86.3 3.82e-19   NR OBS77550.1 56216 g15368 i0 95.7 1.57541899441341 46 2 77.1 0 161 24 1 46 OBS77550.1 hypothetical protein A6R68_20061, partial [Neotoma lepida] diamond 282 86.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Neotoma Neotoma lepida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;