RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB12366" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12366 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20755 20755 PRJEB12366_P_NODE_16301_length_174_cov_1.410072_g16111_i0 PRJEB12366 16301 174 1.410072 2.45352528 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 305 1.02e-78   NTclustered gi|2874253811|emb|OY969795.1| 464461 g16111 i0 98.276 166.431034482759 174 3 100 0 1 174 653981 654154 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 28959 305 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
10223534 10223534 PRJEB12366_P_NODE_19469_length_154_cov_1.680672_g19279_i0 PRJEB12366 19469 154 1.680672 2.58823488 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 257 2.5e-64   NTclustered gi|971146634|emb|LN879502.1| 389348 g19279 i0 96.753 106.142857142857 154 5 100 0 1 154 1251332 1251485 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 16346 257 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
14048916 14048916 PRJEB12366_P_NODE_6712_length_310_cov_0.938182_g6522_i0 PRJEB12366 6712 310 0.938182 2.9083642 uncultured Chlamydiae bacterium 305355 Bacteria Bacteria 377 4.21e-100   NTclustered gi|2874254045|emb|OY970369.1| 305355 g6522 i0 88.71 137.916129032258 310 34 100 1 1 310 174091 174399 MAG: uncultured Chlamydiae bacterium isolate MFD06092.bin.1.176 genome assembly, chromosome: 1 blastn 42754 377 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;