RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB12366", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJEB12366 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15322997 15322997 PRJEB12366_S_NODE_33_length_587_cov_39.929348_g27_i0 PRJEB12366 33 587 39.929348 234.38527276 Minicystis rosea 888845 Bacteria Bacteria 915 0   NTclustered gi|1127353251|gb|CP016211.1| 888845 g27 i0 95.172 120.611584327087 580 27 99 1 1 579 769934 770513 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 70799 915 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
17872435 17872435 PRJEB12366_S_NODE_35_length_577_cov_38.608856_g28_i0 PRJEB12366 35 577 38.608856 222.77309912 Minicystis rosea 888845 Bacteria Bacteria 715 0   NTclustered gi|1127353251|gb|CP016211.1| 888845 g28 i0 91.011 135.459272097054 534 43 92 5 26 556 13715036 13715567 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 78160 715 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
30822914 30822914 PRJEB12366_P_NODE_15354_length_181_cov_1.465753_g15164_i0 PRJEB12366 15354 181 1.465753 2.65301293 Nannocystis bainbridge 2995303 Bacteria Bacteria 53.9 1.57e-6   NR WP_272085911.1 2995303 g15164 i0 44.4 0.895027624309392 54 30 89.5 0 173 12 108 161 WP_272085911.1 3'-5' exonuclease [Nannocystis bainbridge] diamond 162 53.9 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis bainbridge

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;