RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB12366", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJEB12366 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2260935 2260935 PRJEB12366_P_NODE_8662_length_263_cov_2.105263_g8472_i0 PRJEB12366 8662 263 2.105263 5.53684169 Luteolibacter 518753 Bacteria Bacteria 289 1.68e-73   NTclustered gi|2585939279|dbj|AP024600.1| 2819286 g8472 i0 87.121 412.346007604563 264 23 99 9 1 260 2216641 2216385 Luteolibacter sp. LG18 DNA, complete genome blastn 108447 289 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. LG18
2570690 2570690 PRJEB12366_P_NODE_9803_length_242_cov_2.444444_g9613_i0 PRJEB12366 9803 242 2.444444 5.91555448 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 324 4.18e-84   NTclustered gi|226525339|gb|FJ872375.1| 156588 g9613 i0 91.286 201.946280991736 241 15 99 5 2 241 26599 26364 Uncultured Verrucomicrobia bacterium clone 286 genomic sequence blastn 48871 324 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
5123138 5123138 PRJEB12366_P_NODE_16245_length_174_cov_2.223022_g16055_i0 PRJEB12366 16245 174 2.223022 3.86805828 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 278 2.22e-70   NTclustered gi|226525288|gb|FJ872373.1| 156588 g16055 i0 96.45 131.568965517241 169 4 97 2 6 174 17102 17268 Uncultured Verrucomicrobia bacterium clone 118 genomic sequence blastn 22893 278 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
5123189 5123189 PRJEB12366_P_NODE_7265_length_294_cov_1.536680_g7075_i0 PRJEB12366 7265 294 1.53668 4.5178392 Chthoniobacter flavus 191863 Bacteria Bacteria 320 6.77e-83   NTclustered gi|183579828|emb|AM905425.1| 497964 g7075 i0 86.486 123.309523809524 296 34 100 5 1 294 258 549 Chthoniobacter flavus 23S rRNA gene, strain Ellin428 blastn 36253 320 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter flavus
7672995 7672995 PRJEB12366_P_NODE_5547_length_349_cov_1.993631_g5357_i0 PRJEB12366 5547 349 1.993631 6.95777219 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 283 1.07e-71   NTclustered gi|2874253952|emb|OY970277.1| 412056 g5357 i0 81.714 95.3467048710602 350 54 100 8 1 349 2749806 2749466 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 blastn 33276 283 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
28075249 28075249 PRJEB12366_P_NODE_8525_length_266_cov_1.606061_g8335_i0 PRJEB12366 8525 266 1.606061 4.27212226 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.1 0.0345   NR MEY4199220.1 2026799 g8335 i0 41.2 0.575187969924812 51 24 57.5 2 78 230 248 292 MEY4199220.1 nuclease superfamily [Verrucomicrobiota bacterium] diamond 153 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;