RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB12296" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12296 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26044970 26044970 PRJEB12296_S_NODE_1669_length_313_cov_2973.967626_g1637_i0 PRJEB12296 1669 313 2973.967626 9308.51866938 Coraliomargarita algicola 3092156 Bacteria Bacteria 202 2.7499999999999996e-47   NTclustered gi|2623481368|gb|CP138858.1| 3092156 g1637 i0 83.71 52.3546325878594 221 28 70 7 96 313 2458486 2458701 Coraliomargarita algicola strain J2-16 chromosome, complete genome blastn 16387 202 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Coraliomargaritaceae Coraliomargarita Coraliomargarita algicola
26151297 26151297 PRJEB12296_S_NODE_325_length_515_cov_16.729167_g298_i0 PRJEB12296 325 515 16.729167 86.15521005 Synoicihabitans 2892920 Bacteria Bacteria 388 3.38e-103   NTclustered gi|2891482117|emb|OZ219851.1| 2026772 g298 i0 82.403 69.2 466 62 88 19 25 476 1410589 1410130 MAG: Opitutales bacterium isolate e4292735-b3b5-42df-bce3-ad3ef7a88f44 genome assembly, chromosome: 10 blastn 35638 388 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
26453308 26453308 PRJEB12296_S_NODE_7272_length_188_cov_1.470588_g7240_i0 PRJEB12296 7272 188 1.470588 2.76470544 uncultured verrucomicrobium HF 723594 Bacteria Bacteria 183 5.4799999999999996e-42   NTclustered gi|297170473|gb|GU567957.1| 723594 g7240 i0 86.127 298.595744680851 173 20 91 4 18 188 15606 15436 Uncultured verrucomicrobium HF0070_15G23 genomic sequence blastn 56136 183 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured verrucomicrobium HF0070_15G23

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;