RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB12296" and tax_phylum = "Porifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Porifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12296 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26559184 26559184 PRJEB12296_S_NODE_1576_length_319_cov_1973.352113_g1544_i0 PRJEB12296 1576 319 1973.352113 6294.99324047 Metazoa 33208 Porifera other_Eukaryota 99 3.79e-16   NTclustered gi|1284883228|gb|KY825184.1| 178514 g1544 i0 79.452 7.61755485893417 146 24 45 4 122 265 3474 3333 Amphimedon compressa voucher MNRJ:18771 internal transcribed spacer 2 and 28S ribosomal RNA gene, partial sequence blastn 2430 99 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon compressa
32990892 32990892 PRJEB12296_S_NODE_3779_length_234_cov_7.422111_g3747_i0 PRJEB12296 3779 234 7.422111 17.36773974 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 48.1 3.87e-4   NR Q4KTE2.1 55567 g3747 i0 45.8 1.24358974358974 48 26 61.5 0 6 149 190 237 Q4KTE2.1 RecName: Full=Small ribosomal subunit protein uS2; AltName: Full=40S ribosomal protein SA [Suberites domuncula] diamond 291 48.1 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Suberitidae Suberites Suberites domuncula

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;