RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJEB12296" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12296 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25500857 25500857 PRJEB12296_S_NODE_817_length_387_cov_3325.502841_g786_i0 PRJEB12296 817 387 3325.502841 12869.69599467 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 71.3 1.02e-7   NTclustered gi|687789777|emb|LK829830.1| 57078 g786 i0 100 10.2273901808786 38 0 10 0 350 387 534 571 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 3958 71.3 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
25606845 25606845 PRJEB12296_S_NODE_2665_length_267_cov_1533.642241_g2633_i0 PRJEB12296 2665 267 1533.642241 4094.82478347 root 1 Root_unresolved Root_unresolved 108 5.14e-19   NTclustered gi|687789777|emb|LK829830.1| 57078 g2633 i0 98.361 24.6516853932584 61 1 23 0 1 61 598 538 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 6582 108 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
25606868 25606868 PRJEB12296_S_NODE_4377_length_221_cov_1637.575269_g4345_i0 PRJEB12296 4377 221 1637.575269 3619.04134449 root 1 Root_unresolved Root_unresolved 108 4.12e-19   NTclustered gi|687789777|emb|LK829830.1| 57078 g4345 i0 98.361 29.7828054298643 61 1 28 0 161 221 538 598 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 6582 108 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
25908909 25908909 PRJEB12296_S_NODE_2700_length_266_cov_2749.640693_g2668_i0 PRJEB12296 2700 266 2749.640693 7314.04424338 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 71.3 6.72e-8   NTclustered gi|687789777|emb|LK829830.1| 57078 g2668 i0 100 14.8796992481203 38 0 14 0 1 38 571 534 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 3958 71.3 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
26151348 26151348 PRJEB12296_S_NODE_869_length_381_cov_353.488439_g838_i0 PRJEB12296 869 381 353.488439 1346.79095259 root 1 Root_unresolved Root_unresolved 113 1.64e-20   NTclustered gi|687789777|emb|LK829830.1| 57078 g838 i0 98.438 18.0288713910761 64 1 17 0 318 381 538 601 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 6869 113 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
26181223 26181223 PRJEB12296_S_NODE_4582_length_218_cov_1.377049_g4550_i0 PRJEB12296 4582 218 1.377049 3.00196682 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 104 5.25e-18   NTclustered gi|68479954|gb|DQ076149.1| 6182 g4550 i0 79.333 0.688073394495413 150 29 68 2 46 194 405 257 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 150 104 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
26559219 26559219 PRJEB12296_S_NODE_3936_length_230_cov_1146.974359_g3904_i0 PRJEB12296 3936 230 1146.974359 2638.0410257 root 1 Root_unresolved Root_unresolved 108 4.32e-19   NTclustered gi|687789777|emb|LK829830.1| 57078 g3904 i0 98.361 28.5782608695652 61 1 27 0 1 61 598 538 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0063667 blastn 6573 108 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;