RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where bioproject = "PRJEB12296" and tax_phylum = "Ciliophora"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 17 ✖

tax_clade 1

bioproject 1

  • PRJEB12296 · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23937991 23937991 PRJEB12296_P_NODE_819_length_162_cov_1.180451_g806_i0 PRJEB12296 819 162 1.180451 1.91233062 Sterkiella 94288 SAR_Eukaryotes SAR_Eukaryotes 102 1.32e-17   NTclustered gi|331686195|gb|HQ432921.1| 94289 g806 i0 90.789 1.30864197530864 76 7 47 0 65 140 1472 1397 Sterkiella histriomuscorum strain BA elongation factor-1 (ef-1) gene, complete cds; macronuclear blastn 212 102 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella histriomuscorum
25500798 25500798 PRJEB12296_S_NODE_5113_length_210_cov_2.040000_g5081_i0 PRJEB12296 5113 210 2.04 4.284 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 372 1.25e-98   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g5081 i0 98.571 92.647619047619 210 3 100 0 1 210 2113 2322 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 19456 372 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
25606848 25606848 PRJEB12296_S_NODE_2809_length_262_cov_4172.722467_g2777_i0 PRJEB12296 2809 262 4172.722467 10932.53286354 root 1 Root_unresolved Root_unresolved 322 1.65e-83   NTclustered gi|10832|emb|X54512.1| 5911 g2777 i0 94.737 77.8664122137405 209 8 79 3 1 206 8116 8324 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 20401 322 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
25743073 25743073 PRJEB12296_S_NODE_18578_length_150_cov_1.391304_g18546_i0 PRJEB12296 18578 150 1.391304 2.086956 root 1 Root_unresolved Root_unresolved 272 8.609999999999998e-69   NTclustered gi|1837628855|gb|MN158348.1| 5909 g18546 i0 99.333 8 150 1 100 0 1 150 4076 3927 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 1200 272 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
25878833 25878833 PRJEB12296_S_NODE_347_length_505_cov_45.802128_g320_i0 PRJEB12296 347 505 45.802128 231.3007464 Sessilida 1974272 SAR_Eukaryotes SAR_Eukaryotes 778 0   NTclustered gi|2304601486|gb|OP458307.1| 2582953 g320 i0 97.174 82.6891089108911 460 13 91 0 1 460 460 1 Opercularia sp. ZhW-2019a large subunit ribosomal RNA gene, partial sequence blastn 41758 780 0.997435897435897 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Operculariidae Opercularia Opercularia sp. ZhW-2019a
26015245 26015245 PRJEB12296_S_NODE_9020_length_177_cov_9.394366_g8988_i0 PRJEB12296 9020 177 9.394366 16.62802782 Sessilida 1974272 SAR_Eukaryotes SAR_Eukaryotes 316 4.799999999999999e-82   NTclustered gi|1251948964|gb|KY675197.1| 155147 g8988 i0 98.87 99.954802259887 177 2 100 0 1 177 1376 1200 Epistylis chrysemydis large subunit ribosomal RNA gene, partial sequence blastn 17692 316 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Epistylidae Epistylis Epistylis chrysemydis
26045149 26045149 PRJEB12296_S_NODE_7549_length_186_cov_1.324503_g7517_i0 PRJEB12296 7549 186 1.324503 2.46357558 Trithigmostoma cucullulus 1346499 SAR_Eukaryotes SAR_Eukaryotes 313 6.61e-81   NTclustered gi|759083539|gb|KM222156.1| 1346499 g7517 i0 97.79 66.0967741935484 181 4 97 0 6 186 1366 1186 Trithigmostoma cucullulus voucher CXM08110902 large subunit ribosomal RNA gene, partial sequence blastn 12294 313 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Trithigmostoma Trithigmostoma cucullulus
26181280 26181280 PRJEB12296_S_NODE_630_length_419_cov_61.565104_g600_i0 PRJEB12296 630 419 61.565104 257.95778576 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 521 2.56e-143   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g600 i0 93.696 47.653937947494 349 20 83 2 41 388 15 362 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 19967 521 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
26423199 26423199 PRJEB12296_S_NODE_7367_length_187_cov_6.980263_g7335_i0 PRJEB12296 7367 187 6.980263 13.05309181 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 217 5.36e-52   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g7335 i0 87.766 66.8021390374332 188 19 100 3 1 187 2381 2565 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 12492 217 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
26559195 26559195 PRJEB12296_S_NODE_1928_length_298_cov_4248.292776_g1896_i0 PRJEB12296 1928 298 4248.292776 12659.91247248 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 444 3.91e-120   NTclustered gi|1837628855|gb|MN158348.1| 5909 g1896 i0 98.795 74.0234899328859 249 3 84 0 36 284 2719 2967 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 22059 444 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
26559235 26559235 PRJEB12296_S_NODE_5240_length_208_cov_6.358382_g5208_i0 PRJEB12296 5240 208 6.358382 13.22543456 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 363 7.409999999999998e-96   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g5208 i0 98.077 83.9855769230769 208 4 100 0 1 208 2367 2574 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 17469 363 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
32925110 32925110 PRJEB12296_S_NODE_12985_length_163_cov_3.164062_g12953_i0 PRJEB12296 12985 163 3.164062 5.15742106 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 75.1 1.23e-14   NR CDW79704.1 5949 g12953 i0 60.4 1.95092024539877 53 21 97.5 0 163 5 188 240 CDW79704.1 60s ribosomal protein l7 [Stylonychia lemnae] diamond 318 75.1 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
33024903 33024903 PRJEB12296_S_NODE_13852_length_161_cov_1.587302_g13820_i0 PRJEB12296 13852 161 1.587302 2.55555622 Paramecium 5884 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.00546   NR CAD8161077.1 43137 g13820 i0 50 1.93788819875776 52 26 96.9 0 1 156 63 114 CAD8161077.1 unnamed protein product [Paramecium octaurelia] diamond 312 42.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium octaurelia
33044751 33044751 PRJEB12296_S_NODE_5165_length_209_cov_3.419540_g5133_i0 PRJEB12296 5165 209 3.41954 7.1468386 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 70.9 9.88e-14   NR CAG9313846.1 1481888 g5133 i0 63 0.77511961722488 54 20 77.5 0 1 162 68 121 CAG9313846.1 unnamed protein product [Blepharisma stoltei] diamond 162 70.9 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
33061747 33061747 PRJEB12296_S_NODE_16773_length_154_cov_2.336134_g16741_i0 PRJEB12296 16773 154 2.336134 3.59764636 Paramecium pentaurelia 43138 SAR_Eukaryotes SAR_Eukaryotes 53.5 3.75e-7   NR CAD8150344.1 43138 g16741 i0 68.3 2.3961038961039 41 13 79.9 0 154 32 95 135 CAD8150344.1 unnamed protein product [Paramecium pentaurelia] diamond 369 53.5 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium pentaurelia
33164114 33164114 PRJEB12296_S_NODE_4984_length_212_cov_2.412429_g4952_i0 PRJEB12296 4984 212 2.412429 5.11434948 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 58.5 6.44e-9   NR 2XZN_5 5911 g4952 i0 65.3 0.693396226415094 49 16 67.9 1 10 153 66 114 2XZN_5 Chain 5, Ribosomal Protein S26e Containing Protein [Tetrahymena thermophila] diamond 147 58.5 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
33178471 33178471 PRJEB12296_S_NODE_5488_length_205_cov_1.923529_g5456_i0 PRJEB12296 5488 205 1.923529 3.94323445 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 62.8 7.29e-10   NR XP_001009414.2 312017 g5456 i0 51.7 2.54634146341463 58 28 84.9 0 204 31 156 213 XP_001009414.2 50S ribosomal protein L1P [Tetrahymena thermophila SB210] diamond 522 62.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;