RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB12296" and tax_phylum = "Chlorophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12296 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25636654 25636654 PRJEB12296_S_NODE_5810_length_201_cov_3.078313_g5778_i0 PRJEB12296 5810 201 3.078313 6.18740913 uncultured Trebouxiophyceae 167235 Plants Plants 315 2.0199999999999998e-81   NTclustered gi|1735341978|gb|MN419178.1| 167235 g5778 i0 95 99.9800995024876 200 10 99 0 1 200 227 28 Uncultured Trebouxiophyceae clone EukCL46 large subunit ribosomal RNA gene, partial sequence blastn 20096 315 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Trebouxiophyceae
25908845 25908845 PRJEB12296_S_NODE_15476_length_157_cov_2.368852_g15444_i0 PRJEB12296 15476 157 2.368852 3.71909764 Auxenochlorella protothecoides 3075 Plants Plants 161 2.06e-35   NTclustered gi|760449952|ref|XM_011403743.1| 3075 g15444 i0 98.889 0.573248407643312 90 1 57 0 68 157 312 223 Auxenochlorella protothecoides hypothetical protein partial mRNA blastn 90 161 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
26044965 26044965 PRJEB12296_S_NODE_15957_length_156_cov_1.603306_g15925_i0 PRJEB12296 15957 156 1.603306 2.50115736 Auxenochlorella protothecoides 3075 Plants Plants 289 9e-74   NTclustered gi|30314602|dbj|AB097096.1| 3075 g15925 i0 100 99.974358974359 156 0 100 0 1 156 74 229 Auxenochlorella protothecoides gene for 28S rRNA, partial sequence blastn 15596 289 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
26181063 26181063 PRJEB12296_S_NODE_1158_length_350_cov_4.361905_g1126_i0 PRJEB12296 1158 350 4.361905 15.2666675 Auxenochlorella protothecoides 3075 Plants Plants 459 1.67e-124   NTclustered gi|570364818|gb|KC843975.1| 3075 g1126 i0 94.079 93.4714285714286 304 14 86 4 47 348 37688 37387 Auxenochlorella protothecoides chloroplast, complete genome blastn 32715 459 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
26316948 26316948 PRJEB12296_S_NODE_3791_length_234_cov_2.668342_g3759_i0 PRJEB12296 3791 234 2.668342 6.24392028 Pycnococcus provasolii 41880 Plants Plants 73.9 3.47e-14   NR GHP02579.1 41880 g3759 i0 64.9 0.730769230769231 57 19 73.1 1 233 63 121 176 GHP02579.1 60S ribosomal protein L18 [Pycnococcus provasolii] diamond 171 73.9 1 Eukaryota   Viridiplantae Chlorophyta Pseudoscourfieldiophyceae Pseudoscourfieldiales Pycnococcaceae Pycnococcus Pycnococcus provasolii
26316998 26316998 PRJEB12296_S_NODE_6095_length_198_cov_3.147239_g6063_i0 PRJEB12296 6095 198 3.147239 6.23153322 Symbiochloris tschermakiae 1853862 Plants Plants 311 2.5600000000000003e-80   NTclustered gi|189038677|gb|EU734575.1| 1853862 g6063 i0 94.949 44.2424242424242 198 10 100 0 1 198 1097 1294 Symbiochloris tschermakiae strain SAG 46.85 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8 S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence blastn 8760 311 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Symbiochloris Symbiochloris tschermakiae
33095948 33095948 PRJEB12296_S_NODE_1046_length_360_cov_12.424615_g1014_i0 PRJEB12296 1046 360 12.424615 44.728614 Coccomyxa subellipsoidea C-169 574566 Plants Plants 54.3 1.16e-5   NR XP_005650451.1 574566 g1014 i0 69.2 0.783333333333333 39 12 32.5 0 358 242 401 439 XP_005650451.1 translation elongation factor [Coccomyxa subellipsoidea C-169] diamond 282 54.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;