RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB12296" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB12296 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26453210 26453210 PRJEB12296_S_NODE_3480_length_241_cov_4156.781553_g3448_i0 PRJEB12296 3480 241 4156.781553 10017.84354273 Helicobacter pylori 210 Bacteria Bacteria 76.8 1.29e-9   NTclustered gi|2222028449|gb|CP094103.1| 210 g3448 i0 100 18.3609958506224 41 0 17 0 1 41 1292617 1292577 Helicobacter pylori strain Hpfe077 chromosome, complete genome blastn 4425 76.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
26559215 26559215 PRJEB12296_S_NODE_3592_length_238_cov_5258.256158_g3560_i0 PRJEB12296 3592 238 5258.256158 12514.64965604 root 1 Root_unresolved Root_unresolved 73.1 1.64e-8   NTclustered gi|2222028449|gb|CP094103.1| 210 g3560 i0 100 18.4075630252101 39 0 16 0 1 39 1292617 1292579 Helicobacter pylori strain Hpfe077 chromosome, complete genome blastn 4381 73.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;