RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB12296", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJEB12296 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25500695 25500695 PRJEB12296_S_NODE_17713_length_152_cov_1.025641_g17681_i0 PRJEB12296 17713 152 1.025641 1.55897432 Desulfuromonas sp. DDH964 1823759 Bacteria Bacteria 52.8 0.012   NTclustered gi|1015516084|gb|CP015080.1| 1823759 g17681 i0 100 0.184210526315789 28 0 18 0 123 150 550359 550332 Desulfuromonas sp. DDH964 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp. DDH964
25636622 25636622 PRJEB12296_S_NODE_4770_length_215_cov_2.333333_g4738_i0 PRJEB12296 4770 215 2.333333 5.01666595 Desulfatiglandales bacterium 3024416 Bacteria Bacteria 73.1 1.45e-8   NTclustered gi|2621702716|emb|OY759599.1| 3024416 g4738 i0 91.071 0.781395348837209 56 2 26 3 74 128 6655190 6655243 MAG: Desulfatiglandales bacterium isolate ef928343-fb2c-4ac1-bd77-a4af7a033044 genome assembly, chromosome: 1 blastn 168 73.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfatiglandales     Desulfatiglandales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;