RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB12296", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJEB12296 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26045144 26045144 PRJEB12296_S_NODE_7109_length_189_cov_2.461039_g7077_i0 PRJEB12296 7109 189 2.461039 4.65136371 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 217 5.429999999999999e-52   NTclustered gi|2800920897|gb|CP168968.1| 959 g7077 i0 88.398 84.1481481481482 181 19 95 2 6 185 778276 778097 Bdellovibrio bacteriovorus strain Bd5 chromosome, complete genome blastn 15904 217 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
26151318 26151318 PRJEB12296_S_NODE_4789_length_214_cov_4226.385475_g4757_i0 PRJEB12296 4789 214 4226.385475 9044.4649165 root 1 Root_unresolved Root_unresolved 52.8 0.019   NTclustered gi|1566193515|dbj|AP019368.1| 2493639 g4757 i0 90.244 1.0607476635514 41 3 19 1 161 200 398775 398815 Silvanigrellales bacterium RF1110005 DNA, complete genome blastn 227 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Fluviispira Fluviispira sanaruensis
32976602 32976602 PRJEB12296_S_NODE_10995_length_169_cov_1.492537_g10963_i0 PRJEB12296 10995 169 1.492537 2.52238753 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 80.9 1.37e-18   NR MCB0368289.1 2053517 g10963 i0 71.2 0.923076923076923 52 15 92.3 0 168 13 4 55 MCB0368289.1 hypothetical protein [Bdellovibrionales bacterium] diamond 156 80.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;