RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJEB12296", tax_kingdom = "Metazoa" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB12296 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25606897 25606897 PRJEB12296_S_NODE_9073_length_177_cov_1.767606_g9041_i0 PRJEB12296 9073 177 1.767606 3.12866262 Metazoa 33208 Mollusca Mollusca 60.2 8.94e-5   NTclustered gi|2912990805|dbj|AP039595.1| 145626 g9041 i0 93.023 10.7457627118644 43 0 24 3 134 175 55843251 55843291 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 14, sequence blastn 1902 60.2 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
26423121 26423121 PRJEB12296_S_NODE_1135_length_351_cov_3500.762658_g1103_i0 PRJEB12296 1135 351 3500.762658 12287.67692958 Cycloneritida 977767 Mollusca Mollusca 78.7 5.47e-10   NTclustered gi|1566199199|dbj|LC387585.1| 55025 g1103 i0 87.879 12.4871794871795 66 8 19 0 251 316 929 864 Shinkailepas tufari gene for 28S ribosomal RNA, partial sequence blastn 4383 78.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Cycloneritida Phenacolepadidae Shinkailepas Shinkailepas tufari

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;