RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB12296", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJEB12296 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25636525 25636525 PRJEB12296_S_NODE_1850_length_302_cov_5.797753_g1818_i0 PRJEB12296 1850 302 5.797753 17.50921406 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 510 3.86e-140   NTclustered gi|1187200751|gb|KY992724.1| 157466 g1818 i0 98.611 93.7185430463576 288 4 95 0 15 302 749 462 Uncultured Armatimonadetes bacterium clone Sp07PTArm_1 16S ribosomal RNA gene, partial sequence blastn 28303 510 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
26559204 26559204 PRJEB12296_S_NODE_2496_length_274_cov_4.326360_g2464_i0 PRJEB12296 2496 274 4.32636 11.8542264 Chthonomonas 1077265 Bacteria Bacteria 267 8.26e-67   NTclustered gi|526641997|ref|NR_103994.1| 454171 g2464 i0 85.882 313.083941605839 255 31 91 3 2 251 1062 1316 Chthonomonas calidirosea strain T49 23S ribosomal RNA gene, complete sequence blastn 85785 267 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;