RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB12296", tax_clade = "Opisthokonta" and tax_phylum = "Rotifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 7 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 7 ✖

bioproject 1

  • PRJEB12296 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25500875 25500875 PRJEB12296_S_NODE_961_length_369_cov_4.470060_g929_i0 PRJEB12296 961 369 4.47006 16.4945214 Philodina citrina 468664 Rotifera other_Eukaryota 472 2.27e-128   NTclustered gi|407227484|emb|FR856884.1| 468664 g929 i0 90.704 4.11653116531165 355 31 96 2 16 369 2399 2046 Philodina citrina complete mitochondrial genome blastn 1519 472 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
25606879 25606879 PRJEB12296_S_NODE_5425_length_205_cov_13015.329412_g5393_i0 PRJEB12296 5425 205 13015.329412 26681.4252946 Eurotatoria 2816136 Rotifera other_Eukaryota 315 2.0699999999999998e-81   NTclustered gi|146157270|gb|EF485012.1| 96448 g5393 i0 100 82.9268292682927 170 0 83 0 2 171 454 285 Philodina roseola clone Pr_TEL_M telomeric repeat and subterminal DNA junction blastn 17000 315 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
25743152 25743152 PRJEB12296_S_NODE_906_length_376_cov_21.519062_g874_i0 PRJEB12296 906 376 21.519062 80.91167312 Opisthokonta 33154 Rotifera other_Eukaryota 616 1.0099999999999999e-171   NTclustered gi|259129963|gb|GQ398061.1| 104782 g874 i0 98.023 70.8085106382979 354 7 94 0 1 354 6991 6638 Adineta vaga 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 26624 621 0.99194847020934 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
26181124 26181124 PRJEB12296_S_NODE_1766_length_307_cov_3.654412_g1734_i0 PRJEB12296 1766 307 3.654412 11.21904484 Philodina citrina 468664 Rotifera other_Eukaryota 366 9.009999999999999e-97   NTclustered gi|407227484|emb|FR856884.1| 468664 g1734 i0 89.492 5.00651465798046 295 24 95 5 1 292 2109 2399 Philodina citrina complete mitochondrial genome blastn 1537 366 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
26287313 26287313 PRJEB12296_S_NODE_7390_length_187_cov_2.539474_g7358_i0 PRJEB12296 7390 187 2.539474 4.74881638 Adineta 104781 Rotifera other_Eukaryota 307 3.09e-79   NTclustered gi|72153731|gb|DQ089739.1| 104782 g7358 i0 100 22.6791443850267 166 0 89 0 1 166 1665 1500 Adineta vaga 28S ribosomal RNA gene, partial sequence blastn 4241 307 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
26453058 26453058 PRJEB12296_S_NODE_10200_length_172_cov_2.598540_g10168_i0 PRJEB12296 10200 172 2.59854 4.4694888 Philodina roseola 96448 Rotifera other_Eukaryota 318 1.2899999999999999e-82   NTclustered gi|37785582|gb|AY210469.1| 96448 g10168 i0 100 58.25 172 0 100 0 1 172 1747 1576 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 10019 318 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
33130095 33130095 PRJEB12296_S_NODE_3655_length_237_cov_3.292079_g3623_i0 PRJEB12296 3655 237 3.292079 7.80222723 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 60.8 1.96e-9   NR CAF0775232.1 104777 g3623 i0 53.7 0.683544303797468 54 25 68.4 0 237 76 90 143 CAF0775232.1 unnamed protein product [Brachionus calyciflorus] diamond 162 60.8 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;