RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB12296", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 7 ✖

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJEB12296 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1294947 1294947 PRJEB12296_P_NODE_382_length_217_cov_2.861702_g369_i0 PRJEB12296 382 217 2.861702 6.20989334 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 185 1.81e-42   NTclustered gi|909719645|gb|KT185625.1| 5778 g369 i0 93.548 110.470046082949 124 8 80 0 71 194 6376 6253 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 23972 185 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25636723 25636723 PRJEB12296_S_NODE_986_length_367_cov_3.228916_g954_i0 PRJEB12296 986 367 3.228916 11.85012172 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 612 1.2699999999999999e-170   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g954 i0 96.73 67.6839237057221 367 12 100 0 1 367 2290 2656 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24840 612 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
25772863 25772863 PRJEB12296_S_NODE_7403_length_187_cov_1.921053_g7371_i0 PRJEB12296 7403 187 1.921053 3.59236911 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 279 6.74e-71   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g7371 i0 96.45 54.620320855615 169 6 90 0 1 169 4231 4399 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10214 279 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
25878811 25878811 PRJEB12296_S_NODE_1963_length_297_cov_87.240458_g1931_i0 PRJEB12296 1963 297 87.240458 259.10416026 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 486 6.379999999999998e-133   NTclustered gi|300078496|gb|GU001158.1| 5778 g1931 i0 98.545 34.4478114478114 275 4 93 0 22 296 1220 946 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10231 486 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25908944 25908944 PRJEB12296_S_NODE_3820_length_233_cov_8.156566_g3788_i0 PRJEB12296 3820 233 8.156566 19.00479878 Copromyxa sp. PKD 2 3118317 Tubulinea other_Eukaryota 431 2.2899999999999996e-116   NTclustered gi|399764168|gb|JQ271679.1| 1215977 g3788 i0 100 63.7081545064378 233 0 100 0 1 233 411 179 Copromyxa sp. PKD 2011 strain ZEB4 18S ribosomal RNA gene, partial sequence blastn 14844 431 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
26151257 26151257 PRJEB12296_S_NODE_10205_length_172_cov_2.357664_g10173_i0 PRJEB12296 10205 172 2.357664 4.05518208 Vermamoeba 1260114 Tubulinea other_Eukaryota 252 1.33e-62   NTclustered gi|909719645|gb|KT185625.1| 5778 g10173 i0 100 62.2383720930233 136 0 79 0 2 137 5265 5400 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 10705 252 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
26316988 26316988 PRJEB12296_S_NODE_5311_length_207_cov_7.726744_g5279_i0 PRJEB12296 5311 207 7.726744 15.99436008 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 377 2.63e-100   NTclustered gi|909719645|gb|KT185625.1| 5778 g5279 i0 99.517 3.27536231884058 207 1 100 0 1 207 6317 6111 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 678 377 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;