RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB12237" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB12237 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25211642 25211642 PRJEB12237_P_NODE_10200_length_166_cov_2.129771_g10004_i0 PRJEB12237 10200 166 2.129771 3.53541986 Candidatus Protochlamydia 282132 Bacteria Bacteria 307 2.69e-79   NTclustered gi|1691252667|emb|BX908798.2| 264201 g10004 i0 100 80.9879518072289 166 0 100 0 1 166 1250601 1250436 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 13444 307 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
28422843 28422843 PRJEB12237_P_NODE_2046_length_499_cov_3.040948_g1858_i0 PRJEB12237 2046 499 3.040948 15.17433052 Chlamydiales bacterium 2047757 Bacteria Bacteria 147 5.139999999999999e-42   NR MCP5470421.1 2047757 g1858 i0 51.9 3.60120240480962 156 69 92.6 2 488 27 6 157 MCP5470421.1 hypothetical protein [Chlamydiales bacterium] diamond 1797 147 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;