contig_metadata
8 rows where bioproject = "PRJEB12237" and tax_kingdom = "Thermotogati"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2570593 | 2570593 | PRJEB12237_P_NODE_5123_length_270_cov_1.702128_g4927_i0 | PRJEB12237 | 5123 | 270 | 1.702128 | 4.5957456 | Bacteria | 2 | Bacteria | Bacteria | 116 | 4.35e-29 | NR | WP_027463593.1 | 317577 | g4927 | i0 | 66.7 | 19.0333333333333 | 84 | 27 | 93.3 | 1 | 4 | 255 | 237 | 319 | WP_027463593.1 malate dehydrogenase [Deinococcus ficus] | diamond | 5139 | 116 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus ficus | ||
| 3536181 | 3536181 | PRJEB12237_P_NODE_10303_length_165_cov_1.538462_g10107_i0 | PRJEB12237 | 10303 | 165 | 1.538462 | 2.5384623 | Deinococcus | 1298 | Bacteria | Bacteria | 259 | 7.57e-65 | NTclustered | gi|1220362168|gb|CP021081.1| | 317577 | g10107 | i0 | 95.152 | 193.406060606061 | 165 | 6 | 100 | 2 | 1 | 165 | 2341229 | 2341391 | Deinococcus ficus strain CC-FR2-10, complete genome | blastn | 31912 | 259 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus ficus | ||
| 10223414 | 10223414 | PRJEB12237_P_NODE_11809_length_153_cov_1.016949_g11613_i0 | PRJEB12237 | 11809 | 153 | 1.016949 | 1.55593197 | Deinococcus aetherius | 200252 | Bacteria | Bacteria | 272 | 8.84e-69 | NTclustered | gi|2281894955|dbj|AP026560.1| | 200252 | g11613 | i0 | 98.693 | 184.960784313725 | 153 | 2 | 100 | 0 | 1 | 153 | 83450 | 83602 | Deinococcus aetherius ST0316 DNA, complete genome | blastn | 28299 | 272 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus aetherius | ||
| 11498668 | 11498668 | PRJEB12237_P_NODE_10710_length_162_cov_0.944882_g10514_i0 | PRJEB12237 | 10710 | 162 | 0.944882 | 1.53070884 | Trueperaceae bacterium | 2026798 | Bacteria | Bacteria | 195 | 2.12e-45 | NTclustered | gi|2108366028|gb|CP070651.1| | 2026798 | g10514 | i0 | 88.272 | 265.691358024691 | 162 | 19 | 100 | 0 | 1 | 162 | 9550 | 9389 | MAG: Trueperaceae bacterium isolate bin86 chromosome | blastn | 43042 | 195 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Trueperales | Trueperaceae | Trueperaceae bacterium | |||
| 13739002 | 13739002 | PRJEB12237_P_NODE_2271_length_470_cov_2.390805_g2077_i0 | PRJEB12237 | 2271 | 470 | 2.390805 | 11.2367835 | Truepera | 332248 | Bacteria | Bacteria | 632 | 1.2799999999999998e-176 | NTclustered | gi|470486385|ref|NR_076754.1| | 332249 | g2077 | i0 | 90.928 | 157.340425531915 | 474 | 37 | 100 | 4 | 1 | 470 | 1515 | 1986 | Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence | blastn | 73950 | 632 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Trueperales | Trueperaceae | Truepera | Truepera radiovictrix | ||
| 16288299 | 16288299 | PRJEB12237_P_NODE_6713_length_220_cov_2.724324_g6517_i0 | PRJEB12237 | 6713 | 220 | 2.724324 | 5.9935128 | Truepera | 332248 | Bacteria | Bacteria | 300 | 6.3e-77 | NTclustered | gi|470486385|ref|NR_076754.1| | 332249 | g6517 | i0 | 91.324 | 320.254545454545 | 219 | 19 | 99 | 0 | 1 | 219 | 507 | 289 | Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence | blastn | 70456 | 300 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Trueperales | Trueperaceae | Truepera | Truepera radiovictrix | ||
| 20421348 | 20421348 | PRJEB12237_P_NODE_5097_length_271_cov_1.830508_g4901_i0 | PRJEB12237 | 5097 | 271 | 1.830508 | 4.96067668 | Trueperaceae bacterium | 2026798 | Bacteria | Bacteria | 318 | 2.2199999999999995e-82 | NTclustered | gi|2621701816|emb|OY759346.1| | 2026798 | g4901 | i0 | 88.192 | 81.3247232472325 | 271 | 26 | 99 | 6 | 1 | 270 | 3600994 | 3600729 | MAG: Trueperaceae bacterium isolate dd143a13-9bf8-4812-ba0e-a3cf349d91ff genome assembly, chromosome: 1 | blastn | 22039 | 318 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Trueperales | Trueperaceae | Trueperaceae bacterium | |||
| 21387763 | 21387763 | PRJEB12237_P_NODE_9557_length_173_cov_2.826087_g9361_i0 | PRJEB12237 | 9557 | 173 | 2.826087 | 4.88913051 | Truepera | 332248 | Bacteria | Bacteria | 209 | 8.15e-50 | NTclustered | gi|470486385|ref|NR_076754.1| | 332249 | g9361 | i0 | 88.439 | 357.28901734104 | 173 | 20 | 100 | 0 | 1 | 173 | 702 | 530 | Truepera radiovictrix strain RQ-24 23S ribosomal RNA gene, complete sequence | blastn | 61811 | 209 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Trueperales | Trueperaceae | Truepera | Truepera radiovictrix |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;