RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB12237", tax_kingdom = "Fungi" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB12237 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20671 20671 PRJEB12237_P_NODE_1921_length_516_cov_2.548857_g1734_i0 PRJEB12237 1921 516 2.548857 13.15210212 Eukaryota 2759 Fungi Fungi 204 3.91e-59   NR BAL15351.1 278681 g1734 i0 55.9 3.96511627906977 170 75 98.8 0 5 514 129 298 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 2046 204 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
27247954 27247954 PRJEB12237_P_NODE_5183_length_267_cov_4.788793_g4987_i0 PRJEB12237 5183 267 4.788793 12.78607731 Eukaryota 2759 Fungi Fungi 86.3 1.24e-19   NR KAG5461717.1 278681 g4987 i0 61.5 4.76404494382022 65 25 73 0 195 1 3 67 KAG5461717.1 MAG: 60S ribosomal protein L33-A-like protein [Olpidium bornovanus] diamond 1272 87 0.991954022988506 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;