RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB12237", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 4 ✖

tax_kingdom 1

  • Fungi · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB12237 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11498749 11498749 PRJEB12237_P_NODE_9570_length_173_cov_2.028986_g9374_i0 PRJEB12237 9570 173 2.028986 3.51014578 Allomyces macrogynus ATCC 38327 578462 Fungi Fungi 105 1.33e-25   NR KNE68369.1 578462 g9374 i0 91.2 0.988439306358382 57 5 98.8 0 3 173 171 227 KNE68369.1 hypothetical protein AMAG_13026 [Allomyces macrogynus ATCC 38327] diamond 171 105 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus
27507175 27507175 PRJEB12237_P_NODE_6043_length_238_cov_1.615764_g5847_i0 PRJEB12237 6043 238 1.615764 3.84551832 Allomyces macrogynus ATCC 38327 578462 Fungi Fungi 79 2.46e-16   NR KNE55833.1 578462 g5847 i0 50.6 1.99159663865546 79 39 99.6 0 237 1 77 155 KNE55833.1 hypothetical protein AMAG_01701 [Allomyces macrogynus ATCC 38327] diamond 474 79 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus
29969771 29969771 PRJEB12237_P_NODE_8451_length_188_cov_1.549020_g8255_i0 PRJEB12237 8451 188 1.54902 2.9121576 Paraphysoderma sedebokerense 1500003 Fungi Fungi 72 6.59e-13   NR KAI9136537.1 1500003 g8255 i0 59 1.89893617021277 61 25 97.3 0 1 183 291 351 KAI9136537.1 putative alcohol dehydrogenase [Paraphysoderma sedebokerense] diamond 357 72 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
30064477 30064477 PRJEB12237_P_NODE_11232_length_157_cov_1.311475_g11036_i0 PRJEB12237 11232 157 1.311475 2.05901575 Blastocladiella britannica 64508 Fungi Fungi 65.5 3.41e-11   NR KAI9225051.1 64508 g11036 i0 53.8 0.993630573248408 52 24 99.4 0 157 2 51 102 KAI9225051.1 thioredoxin-like protein [Blastocladiella britannica] diamond 156 65.5 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;