RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJEB12237", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 11 ✖

tax_clade 1

  • Sar · 11 ✖

bioproject 1

  • PRJEB12237 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20709 20709 PRJEB12237_P_NODE_7101_length_212_cov_2.175141_g6905_i0 PRJEB12237 7101 212 2.175141 4.61129892 Eimeria maxima 5804 SAR_Eukaryotes SAR_Eukaryotes 58.4 4.01e-4   NTclustered gi|915125688|ref|XM_013478654.1| 5804 g6905 i0 100 2.64622641509434 31 0 15 0 61 91 565 535 Eimeria maxima hypothetical protein, conserved partial mRNA blastn 561 58.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
5123031 5123031 PRJEB12237_P_NODE_10945_length_160_cov_0.952000_g10749_i0 PRJEB12237 10945 160 0.952 1.5232 Nephromyces sp. ex Molgula occidentalis 2544991 SAR_Eukaryotes SAR_Eukaryotes 62.1 2.2e-5   NTclustered gi|1735073328|gb|MK573206.1| 2544991 g10749 i0 97.297 1.65625 37 0 23 1 2 38 29789 29824 Nephromyces sp. ex Molgula occidentalis isolate 656 apicoplast, complete genome blastn 265 62.1 1 Eukaryota Sar   Apicomplexa Aconoidasida Nephromycida   Nephromyces Nephromyces sp. ex Molgula occidentalis
5123092 5123092 PRJEB12237_P_NODE_7765_length_199_cov_1.463415_g7569_i0 PRJEB12237 7765 199 1.463415 2.91219585 Plasmodium chabaudi 5825 SAR_Eukaryotes SAR_Eukaryotes 69.4 1.71e-7   NTclustered gi|1027955205|ref|XM_730772.2| 31271 g7569 i0 100 15.1708542713568 37 0 19 0 91 127 13327 13363 Plasmodium chabaudi chabaudi HECT-like E3 ubiquitin ligase, putative (PCHAS_0933500), partial mRNA blastn 3019 69.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
8947701 8947701 PRJEB12237_P_NODE_8768_length_184_cov_0.979866_g8572_i0 PRJEB12237 8768 184 0.979866 1.80295344 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 95.1 5.55e-24   NR OEH75539.1 88456 g8572 i0 72.4 3.78260869565217 58 16 94.6 0 184 11 5 62 OEH75539.1 small nuclear ribonucleoprotein e [Cyclospora cayetanensis] diamond 696 95.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
14048820 14048820 PRJEB12237_P_NODE_5752_length_246_cov_3.985782_g5556_i0 PRJEB12237 5752 246 3.985782 9.80502372 Piroplasmida 5863 SAR_Eukaryotes SAR_Eukaryotes 143 8.95e-40   NR UKK02294.2 68886 g5556 i0 79 12.8414634146341 81 17 98.8 0 2 244 93 173 UKK02294.2 putative ADP/ATP transporter [Theileria orientalis] diamond 3159 143 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria orientalis
22972692 22972692 PRJEB12237_P_NODE_8699_length_184_cov_2.986577_g8503_i0 PRJEB12237 8699 184 2.986577 5.49530168 Gregarina sp. Phaedon/Daegwallyeong/2010 1049247 SAR_Eukaryotes SAR_Eukaryotes 268 1.43e-67   NTclustered gi|339715944|gb|JF412715.1| 1049247 g8503 i0 92.935 96.3804347826087 184 13 100 0 1 184 4507 4324 Gregarina sp. Phaedon/Daegwallyeong/2010 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence; and 28S-18S intergenic spacer, partial sequence blastn 17734 268 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina sp. Phaedon/Daegwallyeong/2010
26678228 26678228 PRJEB12237_P_NODE_2801_length_415_cov_2.536842_g2605_i0 PRJEB12237 2801 415 2.536842 10.5278943 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 111 4.2100000000000006e-27   NR OEH74043.1 88456 g2605 i0 43 4.73493975903614 128 73 92.5 0 32 415 110 237 OEH74043.1 ribosomal protein rpp0 [Cyclospora cayetanensis] diamond 1965 111 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
26805083 26805083 PRJEB12237_P_NODE_10901_length_160_cov_1.280000_g10705_i0 PRJEB12237 10901 160 1.28 2.048 Sarcocystidae 5809 SAR_Eukaryotes SAR_Eukaryotes 48.5 1.1e-4   NR XP_067926039.1 483139 g10705 i0 47.8 8.7 46 24 86.3 0 159 22 347 392 XP_067926039.1 camp-dependent protein kinase regulatory subunit [Cystoisospora suis] diamond 1392 48.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Cystoisospora Cystoisospora suis
30058119 30058119 PRJEB12237_P_NODE_5871_length_243_cov_1.730769_g5675_i0 PRJEB12237 5871 243 1.730769 4.20576867 Conoidasida 1280412 SAR_Eukaryotes SAR_Eukaryotes 58.2 1.01e-7   NR XP_022587039.1 88456 g5675 i0 35.1 2.74074074074074 74 47 91.4 1 19 240 161 233 XP_022587039.1 phosducin-like protein 3 [Cyclospora cayetanensis] diamond 666 58.2 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
30816572 30816572 PRJEB12237_P_NODE_6934_length_216_cov_1.767956_g6738_i0 PRJEB12237 6934 216 1.767956 3.81878496 root 1 Root_unresolved Root_unresolved 101 5.32e-25   NR KAK1441808.1 33632 g6738 i0 66.2 6.90277777777778 71 23 98.6 1 3 215 75 144 KAK1441808.1 ribosomal protein L22/L17 like protein [Babesia gibsoni] diamond 1491 102 0.990196078431373 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia gibsoni
32776409 32776409 PRJEB12237_P_NODE_7020_length_214_cov_1.597765_g6824_i0 PRJEB12237 7020 214 1.597765 3.4192171 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 45.8 5.52e-4   NR XP_953348.1 5874 g6824 i0 42.9 1.30373831775701 49 25 68.7 1 68 214 9 54 XP_953348.1 60S ribosomal protein P1, putative [Theileria annulata] diamond 279 46.2 0.991341991341991 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria annulata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;