RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJEB11748" and tax_phylum = "candidate division WOR-3"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • candidate division WOR-3 · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB11748 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28106776 28106776 PRJEB11748_P_NODE_83725_length_458_cov_10.073048_g81560_i0 PRJEB11748 83725 458 10.073048 46.13455984 candidate division WOR-3 bacterium 2052148 Bacteria Bacteria 220 1.69e-65   NR MEO0075161.1 2052148 g81560 i0 74.6 3.58951965065502 138 35 90.4 0 435 22 475 612 MEO0075161.1 site-specific DNA-methyltransferase [candidate division WOR-3 bacterium] diamond 1644 220 1 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium
29149147 29149147 PRJEB11748_P_NODE_325569_length_208_cov_2.129252_g323386_i0 PRJEB11748 325569 208 2.129252 4.42884416 candidate division WOR-3 bacterium 2052148 Bacteria Bacteria 91.7 2.57e-22   NR MCK4527423.1 2052148 g323386 i0 75 2.59615384615385 60 15 86.5 0 182 3 1 60 MCK4527423.1 NAD(P)H-dependent oxidoreductase [candidate division WOR-3 bacterium] diamond 540 91.7 1 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium
30658582 30658582 PRJEB11748_P_NODE_307013_length_216_cov_3.051613_g304830_i0 PRJEB11748 307013 216 3.051613 6.59148408 Bacillati 1783272 Bacteria Bacteria 97.4 1.4200000000000002e-21   NR MEO0248440.1 2052148 g304830 i0 74.2 3.54166666666667 62 16 86.1 0 214 29 165 226 MEO0248440.1 glycosyltransferase family 4 protein [candidate division WOR-3 bacterium] diamond 765 97.4 1 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium
32499115 32499115 PRJEB11748_P_NODE_160099_length_323_cov_3.980916_g157917_i0 PRJEB11748 160099 323 3.980916 12.85835868 candidate division WOR-3 bacterium 2052148 Bacteria Bacteria 48.5 3.88e-4   NR MEO0250055.1 2052148 g157917 i0 33 0.81733746130031 88 58 81.7 1 272 9 6 92 MEO0250055.1 hypothetical protein [candidate division WOR-3 bacterium] diamond 264 48.5 1 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;